Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177935.1_202017-04- 25] 2,167 sequences; 11,642,650 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq362 174 4e-38 seq1051 159 8e-34 seq327 152 1e-31 seq1868 147 5e-30 seq1065 93.3 1e-13 seq598 93.3 1e-13 seq1007 91.5 4e-13 >seq362 Length=22573 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||| ||||| ||||||| ||||| |||| ||||||||| || Sbjct 13886 TCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 13945 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || ||||||||| || |||||||||||||| Sbjct 13946 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 14005 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || || ||||| || | ||| || || | || || Sbjct 14006 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAAT 14065 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | |||||| || Sbjct 14066 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 14104 >seq1051 Length=28834 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||||||||||||||| | ||||| || | ||| ||||| || Sbjct 11063 TCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 11122 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 11123 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 11182 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| |||||| ||| ||| || || ||||| || | ||| || || || ||||| Sbjct 11183 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 11242 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || |||||||| || Sbjct 11243 GGTCTTACCAGTCAAAGTCTT 11263 >seq327 Length=20421 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || | ||||||||| ||||||| ||||| || | | |||||| || Sbjct 14657 TCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAGAGTTCTACC 14598 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 14597 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 14538 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| |||||| ||| ||| || || ||||| || | ||| || || || ||||| Sbjct 14537 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 14478 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||| || |||||||| || | ||| Sbjct 14477 GGTCTTACCAGTCAAAGTCTTAACGAA 14451 >seq1868 Length=22670 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||| ||||| ||||||| ||||| || | ||| ||||| || Sbjct 9906 TCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACC 9847 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||||||||| || || ||||| | | ||||| || || || ||||||||||| Sbjct 9846 GTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTT 9787 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| ||||| || ||| || ||||| ||||| |||| ||| || ||||| ||||| Sbjct 9786 GTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGAT 9727 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 || || || |||||||| || Sbjct 9726 GGTTTTACCGGTCAAAGTCTT 9706 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| ||| ||||| |||||||| || ||||| | |||||| || | || ||||| ||| Sbjct 10589 CTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCA 10530 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 |||||||| || || || || ||||| | || ||| ||||| || ||||||||||||||| Sbjct 10529 TCTTCTAGTTGTTTACCGGCAAAGATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTG 10470 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| || || ||| || || || ||||| || | ||| || |||| || || Sbjct 10469 TCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATA 10410 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||| || || | ||| | |||||| Sbjct 10409 GTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 10375 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || ||||| || | ||||| || || || | |||||||| | || ||||| Sbjct 9680 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTG 9621 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || |||||||||||||| || || ||||| | || |||||| || || || ||||||||| Sbjct 9620 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCC 9561 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| || || ||| || |||||||| || || | ||| || || || || Sbjct 9560 TTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTT 9501 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || |||||||| || | ||| | ||||| Sbjct 9500 ATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 9463 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || ||||| ||||| ||||| ||||||| ||||| || | ||| ||||| || Sbjct 10362 TCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACC 10303 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||||| ||||| ||||| || || | || ||||| || || || |||||||| || Sbjct 10302 ATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTT 10243 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || || || || || ||||| || | ||| || |||| || || Sbjct 10242 ATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTAT 10183 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | |||||| | ||| | |||||| Sbjct 10182 AGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 10147 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || ||||| || | || ||||| | || ||||| || ||||| || ||||| || Sbjct 10115 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 10056 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || |||||| || || |||||||||||||||||||| || || ||| Sbjct 10055 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 9996 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || ||||| || | ||| || |||| || || ||||| || |||| || Sbjct 9995 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 9936 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 9935 TTGACAAAAATTTGCAT 9919 >seq1065 Length=115 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | || ||||||||| || || ||||||||||||||||| ||||| Sbjct 115 CTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTT 56 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 | ||| ||| || || ||||| || | ||| || || || ||||| ||||| Sbjct 55 TGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTT 2 >seq598 Length=115 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | || ||||||||| || || ||||||||||||||||||||||| Sbjct 115 CTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTT 56 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 ||| ||| || || ||||| || | ||| || || || ||||| ||||| Sbjct 55 GGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTT 2 >seq1007 Length=7551 Score = 91.5 bits (100), Expect = 4e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || |||||||| || |||||||| Sbjct 549 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCGGAGACATCACC 608 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 |||| ||||| | |||||| || || |||| || ||| Sbjct 609 ACCTTGGGTTTCAATAACAGGCAAAGCAGTTAAAGAACCA 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192498089743898