Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177945.1_202017-04- 26] 24,998 sequences; 12,874,792 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq17571 114 2e-20 seq9838 114 2e-20 seq4933 96.9 4e-15 >seq17571 Length=2668 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 19341 TAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAG 19400 ||||| || | || || ||| |||| ||||| || ||||||||| | | |||||| | Sbjct 1881 TAAGAACTACAAAGATTCCTCAAATTGGTGACAAATTTGCTTCTCGTCACGGTCAAAAGG 1940 Query 19401 GCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGC 19460 | || |||||| | |||||| |||||||||||| ||||| ||| ||||| || | Sbjct 1941 GTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACCGCAGAAGGTATTGTTC 2000 Query 19461 CGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||| | ||||||||||| |||||| ||||| ||| ||||| Sbjct 2001 CAGATTTGATTATTAACCCTCATGCTATTCCATCTCGTATGAC 2043 >seq9838 Length=2727 Score = 114 bits (126), Expect = 2e-20 Identities = 254/377 (67%), Gaps = 18/377 (5%) Strand=Plus/Minus Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664 ||||| || |||||||| ||| | |||| || || || ||| ||||||| || || Sbjct 1518 AAAATCGTCAATGGTCCAGAAATTTTGAGTAAGTACGTTGGTTCTTCAGAAGAAAACATT 1459 Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGC--AGGTTTAGCTAG-TAAA 164721 | || || ||| |||| || |||| |||| | | | || ||| | || | | Sbjct 1458 CGTAATTTATTTAAGGATGCAGAAGCAGAATATAGG---GCCAAGGGTGAGGAATCTTCC 1402 Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT------GAT 164775 |||||| ||||| |||| |||||| | ||| || ||| ||| | | ||| | | Sbjct 1401 TTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGT 1342 Query 164776 AATATTATTCATGATG----CAGTG--GTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 || || | || | || || |||||||| ||| | ||||||| |||||||| Sbjct 1341 GATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAGCTAAAATGGATGGTGTT 1282 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || || ||||||||||| || | ||||||||||| || |||||||| || | Sbjct 1281 GATCAATTGAATAATATTTTGGTTATTGGTATGACCAATCGTAAAGATTTAATAGACAGT 1222 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 ||| | || || || ||| |||| ||| | || | ||||| |||||||| || || Sbjct 1221 GCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTCATTTACCCGATGAAAAA 1162 Query 164950 GGACGCCTTCAAATTTT 164966 ||| | || |||||||| Sbjct 1161 GGAAGACTCCAAATTTT 1145 >seq4933 Length=974 Score = 96.9 bits (106), Expect = 4e-15 Identities = 293/456 (64%), Gaps = 35/456 (8%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | || | || || ||| ||||| ||| ||||| || | |||||||| Sbjct 928 TTGTTCTTTCAAGGCATCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAAT 869 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 || |||||||| | ||| || ||| ||| |||||| | || || || ||||| || Sbjct 868 GAACTCACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGA 809 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAG- 6988 || | ||||| ||||| || || |||||||| || | ||| || || ||| Sbjct 808 TGCAATGTTAAATGGTACTCCCAACCCCATATCACAAGAACGTTGGTACAAT----AAGC 753 Query 6989 ATAAAA---------TATTG------------TCTATAG---------CATAAAATTGAC 7018 || ||| || | ||| | | |||| || || Sbjct 752 ATGAAAGGCGGGGCTTACCGGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTG 693 Query 7019 ACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCA 7078 | || | ||| ||||| || ||| | | || | ||||| ||| ||||| ||| ||| Sbjct 692 AAAAAATATGGCATGGTGGCAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCA 633 Query 7079 TTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGAT 7138 | | || | |||||| | |||||||| |||| ||| |||| || ||||||| Sbjct 632 TAATGATTCTTCTATCGTAGGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGAT 573 Query 7139 CTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCC 7198 | ||||| || || ||| | || || | | || ||||| |||||||| |||| Sbjct 572 CAATACCTTGTCCAGTATAGTCGTCATCGCACGTCTTGTATTTAGCACCAAAATGCCTCC 513 Query 7199 ATTGAAACCCATAAATAGGACCTAAATCACCTTCTT 7234 ||||||| ||||||| || || | ||| ||| ||| Sbjct 512 ATTGAAATCCATAAACGGGCCCCAGATCTCCTACTT 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595685804896800