Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq3115 515 1e-141 seq5541 205 3e-48 seq1613 199 1e-46 seq3543 161 3e-35 seq822 80.6 8e-11 >seq3115 Length=618 Score = 515 bits (570), Expect = 1e-141 Identities = 474/600 (79%), Gaps = 0/600 (0%) Strand=Plus/Minus Query 42617 GCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCCACCGCCAGGGCGTTGACCAGC 42676 ||||||||||| | || ||||||||| || |||||||| | ||| |||||||| || Sbjct 613 GCGTTGGCGAGGTGGATGTCCTCGTGGCGCAGCACGCCGAGGCACAGCGCGTTGACGAGA 554 Query 42677 GGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCGCCGATGTTCGGCAGACCGAGG 42736 || ||| |||| || || ||||| ||| ||||||||||||||||||||| |||||| Sbjct 553 GGGTTGCCCTGGTACGAGGAGTCGAAGACGAGCTCGCCGCCGATGTTCGGCAGGCCGAGG 494 Query 42737 CAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGCACGACCCGCGCCGTGTCGGGG 42796 | |||||||||| || || |||||| ||||||||||||||| ||||||||||| ||| Sbjct 493 CTGTTGCCGTAGCCGCCGACGCCGCTCACGACGCCGTGCACGACGCGCGCCGTGTCCGGG 434 Query 42797 TCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAG 42856 | |||| | ||||||||||| || ||||||||| ||||| ||||| |||||||||||| Sbjct 433 TGGTCGACGGCGCCGAAGCGGAGCTGGTCCATGACGGCGACGGGGCGCGCGCCCATGGAG 374 Query 42857 ATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAAC 42916 ||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||| |||| Sbjct 373 ATGATGTCGCGCACGATGCCGCCGACACCCGTCGCGGCGCCCTGGTAGGGCTCGACGAAC 314 Query 42917 GAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCGCCGACGTCGATG 42976 || ||||||||||| ||| |||||||||| || ||||| || || |||| ||||| | Sbjct 313 GACGGGTGGTTGTGCGACTCGACCTTGAACGTCACGGCCCAGCCGTCACCGATGTCGACG 254 Query 42977 ACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCGCTCGCGCATCTCGTCCGAGACCTTC 43036 ||||||||||||| || || ||||| | ||| ||| ||||||||||| | | | Sbjct 253 ACGCCCGCGTTCTCGCCGATGCCGACGAGCAGGTGCTTCTTCATCTCGTCCGTGGTCGCC 194 Query 43037 TGCCCGAACCTCTTGAGGTAGAGCTTGCTCGACTTGTAGGAGCAGTGCTCCGACCACATC 43096 |||||| || |||| || |||| ||||||||| ||||||||||| |||||||| Sbjct 193 GCGCCGAACTTCGACAGGTGGACCTTGGACGACTTGTACGAGCAGTGCTCGGACCACATG 134 Query 43097 ACCGAGTACATCGCCAGCTCGCCCGAGGTGGGGCGGCGGCCGAGGATCTCCTTGATCCTC 43156 || ||||||||||| ||||| | | ||||||||||| || ||||| || ||| | | Sbjct 133 ACGGAGTACATCGCGAGCTCCGCGGCCGTGGGGCGGCGCCCCAGGATGTCGCGGATGCGC 74 Query 43157 GCGTACTCGTCGTCCTTGAGGCCCAGCGCCGCGTAGGGCTGCTCCTTCTCCGGAGTCGCG 43216 ||||||||| ||||||||| ||| | ||| | ||||| ||| || || || ||| Sbjct 73 TGGTACTCGTCTGGCTTGAGGCCGAGCTCGGCGAACGGCTGGACCTCGTCGGGCGTGGCG 14 >seq5541 Length=284 Score = 205 bits (226), Expect = 3e-48 Identities = 203/260 (78%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 11085 CGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCTTCGACCGTCAGGCGAACGAGT 11144 ||||||| |||||||| | || || |||||||| ||||||||||| ||| ||||||||| Sbjct 19 CGGTGGCCAACTTCACGGTGGCGTCCACGCCGCGGACCTTCGACCGCCAGTCGAACGAGT 78 Query 11145 GGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTGTGGCGCGAGTTCGCGGAGCAC 11203 |||||||||| || | |||||| | || ||| || | ||||||||| ||||||| || Sbjct 79 GGAAGGACGGGGACACCCTGTTCATGCGCTGC-TCGATCTGGCGCGAGGCCGCGGAGAAC 137 Query 11204 GTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCATCCGGACGCCTGAAGCAGCGC 11263 || |||| |||||||| ||||||||||| ||||||| || ||||| |||||| Sbjct 138 GTCGCGGAGTCGCTGACGAAGGGCATGCGCGTCATCGTGCAGGGCCGCCTCGTCCAGCGC 197 Query 11264 TCCTACCAGGACCGCGAGGGCAACAACCGCACCGCGATCGAGCTCGAGGTGGACGAGATC 11323 || ||| || ||||||||| | || ||||||| ||||||| |||||||||||||| Sbjct 198 TCGTACGAGACCCGCGAGGGGGAGAAGCGCACCGTCGTCGAGCTGCAGGTGGACGAGATC 257 Query 11324 GGCCCGAGCCTCCGCTACGC 11343 | || ||| |||||||| Sbjct 258 TGTCCCTCCCTGCGCTACGC 277 >seq1613 Length=394 Score = 199 bits (220), Expect = 1e-46 Identities = 157/188 (84%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42171 TGACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACGCGT 42230 |||||||||||| |||| |||||| || ||||||||| |||||| |||||||||| ||| Sbjct 1 TGACCTCGCCGATGACGGCGGTCTCGACGTCCCACTTGGCGGTGATGGCGAGGAACTCGT 60 Query 42231 CGAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCGACATGAGGATCT 42290 |||||||| | |||| ||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 61 CGAGCTTCTCCGGCGCGACGACCGCCATCATGCGCTCCTGCGACTCGGACATGAGGATCT 120 Query 42291 CCTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGC 42350 | | || |||||| |||||||| || || |||| ||||||| | |||||||| |||| Sbjct 121 CGCCCGCGTTGAGCGTCGGGTCGCGCAGCAGGACGTCGTCGAGCCACACGTGCATGCCGC 180 Query 42351 TGTTGCCG 42358 || |||| Sbjct 181 CGTCGCCG 188 Score = 100 bits (110), Expect = 8e-17 Identities = 86/104 (83%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 42380 GCGCAGGAGATGCCTGCAGCCCCGAGGTCCTGGATCGCCTCGACCAGCT-CGTCGCGGTA 42438 ||||| |||||||| || || |||||||||||||| |||| || | || || ||| ||| Sbjct 259 GCGCACGAGATGCCGGCGGCACCGAGGTCCTGGATGCCCTCCACGACCTGCGCCGC-GTA 317 Query 42439 CAGCTCCAGGCAGCACTCGATGAGCACCTTCTCGGCGAAGGGGT 42482 ||||| ||||||||||||||||| |||||||| |||||||| Sbjct 318 GAGCTCGAGGCAGCACTCGATGAGGACCTTCTCCATGAAGGGGT 361 >seq3543 Length=194 Score = 161 bits (178), Expect = 3e-35 Identities = 130/157 (83%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 44408 CGCCTTCATGGGCGTCCAGCTCGCCGTCTTCGGCGTGTACATGGGGGCCTCGTTCGCTCC 44467 ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 169 CGCCTTCCTGGGCGTCCAGCTCGCCGTCTTCGGCGTCTACATGGGGGCGTCGTTCGCCCC 110 Query 44468 GAACCACAAGGGCATGCCGATCATCGCGTCCGATGCCCGCCTCGACTTCTTCACCAAGCA 44527 ||||||||||||||| |||||||| | |||| | |||||||| | ||||||| Sbjct 109 CAACCACAAGGGCATGGCGATCATCCCCGCCGACAGCAAGATCGACTTCCTGTCCAAGCA 50 Query 44528 GGTGGGCACCTCCCGCAACATACGCGGAGGCTGGTGG 44564 ||| |||||| || ||||| ||||| || |||||| Sbjct 49 GGTCCTCACCTCGCGGAACATCCGCGGCGGGTGGTGG 13 >seq822 Length=666 Score = 80.6 bits (88), Expect = 8e-11 Identities = 78/97 (80%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 |||||||| || ||||| |||||||| | ||||||||||| | |||||| ||||||||| Sbjct 100 ATGGCAGGTGACACCGTCATCACGGTGATCGGGAACCTCACGGGAGACCCGGAGCTGCGT 41 Query 11066 TACACGCAGAACGGGCTGC--CGGTGGCGAACTTCAC 11100 | ||| | |||| ||| ||||||| |||||||| Sbjct 40 TTCAC-CCCCTCGGG-TGCGGCGGTGGCCAACTTCAC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148233944986050