Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq114 131 1e-25 seq2208 102 7e-17 seq2518 91.5 1e-13 seq2623 84.2 2e-11 >seq114 Length=22662 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || || || || ||||| ||||| || |||||| ||| ||| || Sbjct 8460 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 8519 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | | || ||||| || ||| ||||| || || | || || Sbjct 8520 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 8579 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||| | |||||||| || || |||||||||||| || |||| || |||| || Sbjct 8580 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 8639 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||| ||||||||||| ||| |||| || ||||| |||| || Sbjct 8640 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 8689 >seq2208 Length=28744 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622 ||||| || || || || ||||| ||||| || ||| ||| |||| || || | Sbjct 17475 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 17534 Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682 | | || ||||| ||| || ||||| || || | || || ||||| ||| | Sbjct 17535 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 17594 Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| || || ||||||||||| || ||| || | || || |||||||||||| Sbjct 17595 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 17654 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||| ||| ||||| | || || ||||| |||| || || || Sbjct 17655 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTATCAT 17698 >seq2518 Length=33988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || || || || ||| || ||| |||| Sbjct 11862 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 11803 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | |||| || || || ||||| || | || |||||| Sbjct 11802 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 11743 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| || || ||| | |||||| || ||| || | || || ||| Sbjct 11742 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 11683 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||||||||| ||| |||| || ||||| |||| || || Sbjct 11682 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTAT 11633 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||| ||| | || ||||| || || ||| ||||||| || ||| || | || Sbjct 11977 AGATCAACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGA 11918 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||| ||||| ||||| |||| |||| || ||||| |||| || || Sbjct 11917 TTATAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTAT 11861 >seq2623 Length=54717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622 || || || || || || ||||| ||||| || ||| ||| |||| || || | Sbjct 37594 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 37535 Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682 | || ||||| || ||| ||||| || || | || || ||||| ||| | Sbjct 37534 GATAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 37475 Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| || || ||||||||||| || |||| | | || || ||||| ||||| Sbjct 37474 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 37415 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||| ||| | || |||| || |||||| |||| || || || Sbjct 37414 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTATCAT 37371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425368118806425