Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04-
25] 7,075 sequences; 12,875,875 total letters
Query= NC_021298.1
Length=51252
Score E
Sequences producing significant alignments: (Bits) Value
seq3950 289 9e-74
seq3318 172 2e-38
seq2703 138 4e-28
seq2001 86.0 2e-12
seq6546 80.6 9e-11
>seq3950
Length=891
Score = 289 bits (320), Expect = 9e-74
Identities = 271/345 (79%), Gaps = 0/345 (0%)
Strand=Plus/Minus
Query 39701 CTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTTCGTGTG 39760
||| |||||||| ||| |||| |||| |||||||||| || || ||||||||||||||
Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827
Query 39761 AGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 39820
|| || ||||||||| ||||| ||||||||||||| ||||||||||| ||| |||||
Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767
Query 39821 GTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGAC 39880
||||||||||||| | | || || || | |||||| | |||||||||||||||||| ||
Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707
Query 39881 CGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTT 39940
||||||||| || | || ||||||||||||| ||| |||||| || | ||
Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647
Query 39941 CTCCAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGAT 40000
||| | |||| ||||| | ||| | ||||||||||| ||||||| | | |||
Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587
Query 40001 CGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAG 40045
|||||||||||| |||||||||||||||||||| | ||||| ||
Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAG 542
>seq3318
Length=399
Score = 172 bits (190), Expect = 2e-38
Identities = 223/301 (74%), Gaps = 9/301 (3%)
Strand=Plus/Plus
Query 39178 CGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCGT-GCTCCCCGTTGGGGGTG 39236
|||| ||||| |||| | || || ||||||||||| ||| || | ||| ||||
Sbjct 105 CGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGGATGTCGCCGCCCACCGC----GGTG 160
Query 39237 AACGA-GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGAGA 39295
||| || | |||| | |||||| ||||| || || | | ||||||||| |
Sbjct 161 AACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGGAGCACGGTGATGTGCATGCGCCGGCA 219
Query 39296 CTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTG-AGCGCAGCCG 39354
|||| |||||| ||||| ||||| ||||||||||| ||| | || || ||||
Sbjct 220 CTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTCGCGCAC-GCTCTGCAGGAGCGCCG 278
Query 39355 CCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGT 39414
|||||||||| | ||||||| || ||| || ||||||| | |||||| | ||| ||||
Sbjct 279 CCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACGCCGTCCAGTACGCCACGAGGCCGT 338
Query 39415 ACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACA 39474
|| | || |||||||||||||||||||||||||| |||||||| |||||| |||||| |
Sbjct 339 ACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCGCGAACGGTACCAGCGTGTCCCAGA 398
Query 39475 C 39475
|
Sbjct 399 C 399
>seq2703
Length=198
Score = 138 bits (152), Expect = 4e-28
Identities = 135/173 (78%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 40620 CCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATG 40679
|| || || ||||| || || |||||||| | || ||| | ||||| |||||| ||||
Sbjct 3 CCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGATG 62
Query 40680 AAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739
||||| ||||| |||||||||||| ||||||||||||||||||||| | ||| |||||
Sbjct 63 AAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCTCG 122
Query 40740 TACTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACG 40789
||||| |||||||| || | ||||| ||||||| |||||||| ||
Sbjct 123 TACTGCGCCTGCTTGC---GCGCCGCGTCCGGGATGCCGTTGGGGTACCGGCG 172
>seq2001
Length=244
Score = 86.0 bits (94), Expect = 2e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 38825 CTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38884
||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 220 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 161
Query 38885 GAGACGCGGACCCTTCGCCCAGTCC 38909
||| ||| | ||| ||||||||
Sbjct 160 GAGGCGCTGCTTCTTGTCCCAGTCC 136
>seq6546
Length=473
Score = 80.6 bits (88), Expect = 9e-11
Identities = 130/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 41304 GGGCACCCCGTGGTTCCGATGATGCCCTCGCTGCACTCGGCGACGAGTTCCTTGTCGAGG 41363
|||||||| | || ||| || ||||| || | || || ||| || ||| | |
Sbjct 213 GGGCACCCGCTCGTCGCGACGAGGCCCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATG 154
Query 41364 CGGGCGTACTTGCCCATCAGCCCCTCCTGGTAGGAGCGAGACGTGATGCGCATGAGGTTG 41423
|| | ||||||||||| ||||||| | | | | | |||| || | ||||||
Sbjct 153 CGCGGCCACTTGCCCATCTGCCCCTCGAGCGACGCGAGCGACGACGCCCGGAACAGGTTG 94
Query 41424 TGAAGGCCCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTGTACGCACCGTTACCCGAC 41483
|| || ||| |||| || |||||||| ||||||||||||||||||||| ||||
Sbjct 93 TGCAGACCCTCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCGCGCCGAG 34
Query 41484 ACGTCGT 41490
|||||||
Sbjct 33 ACGTCGT 27
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163871031116100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |