Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq3950 289 9e-74 seq3318 172 2e-38 seq2703 138 4e-28 seq2001 86.0 2e-12 seq6546 80.6 9e-11 >seq3950 Length=891 Score = 289 bits (320), Expect = 9e-74 Identities = 271/345 (79%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 39701 CTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTTCGTGTG 39760 ||| |||||||| ||| |||| |||| |||||||||| || || |||||||||||||| Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827 Query 39761 AGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 39820 || || ||||||||| ||||| ||||||||||||| ||||||||||| ||| ||||| Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767 Query 39821 GTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGAC 39880 ||||||||||||| | | || || || | |||||| | |||||||||||||||||| || Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707 Query 39881 CGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTT 39940 ||||||||| || | || ||||||||||||| ||| |||||| || | || Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647 Query 39941 CTCCAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGAT 40000 ||| | |||| ||||| | ||| | ||||||||||| ||||||| | | ||| Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587 Query 40001 CGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAG 40045 |||||||||||| |||||||||||||||||||| | ||||| || Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAG 542 >seq3318 Length=399 Score = 172 bits (190), Expect = 2e-38 Identities = 223/301 (74%), Gaps = 9/301 (3%) Strand=Plus/Plus Query 39178 CGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCGT-GCTCCCCGTTGGGGGTG 39236 |||| ||||| |||| | || || ||||||||||| ||| || | ||| |||| Sbjct 105 CGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGGATGTCGCCGCCCACCGC----GGTG 160 Query 39237 AACGA-GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGAGA 39295 ||| || | |||| | |||||| ||||| || || | | ||||||||| | Sbjct 161 AACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGGAGCACGGTGATGTGCATGCGCCGGCA 219 Query 39296 CTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTG-AGCGCAGCCG 39354 |||| |||||| ||||| ||||| ||||||||||| ||| | || || |||| Sbjct 220 CTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTCGCGCAC-GCTCTGCAGGAGCGCCG 278 Query 39355 CCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGT 39414 |||||||||| | ||||||| || ||| || ||||||| | |||||| | ||| |||| Sbjct 279 CCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACGCCGTCCAGTACGCCACGAGGCCGT 338 Query 39415 ACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACA 39474 || | || |||||||||||||||||||||||||| |||||||| |||||| |||||| | Sbjct 339 ACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCGCGAACGGTACCAGCGTGTCCCAGA 398 Query 39475 C 39475 | Sbjct 399 C 399 >seq2703 Length=198 Score = 138 bits (152), Expect = 4e-28 Identities = 135/173 (78%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 40620 CCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATG 40679 || || || ||||| || || |||||||| | || ||| | ||||| |||||| |||| Sbjct 3 CCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGATG 62 Query 40680 AAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 ||||| ||||| |||||||||||| ||||||||||||||||||||| | ||| ||||| Sbjct 63 AAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCTCG 122 Query 40740 TACTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACG 40789 ||||| |||||||| || | ||||| ||||||| |||||||| || Sbjct 123 TACTGCGCCTGCTTGC---GCGCCGCGTCCGGGATGCCGTTGGGGTACCGGCG 172 >seq2001 Length=244 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38825 CTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38884 ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 220 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 161 Query 38885 GAGACGCGGACCCTTCGCCCAGTCC 38909 ||| ||| | ||| |||||||| Sbjct 160 GAGGCGCTGCTTCTTGTCCCAGTCC 136 >seq6546 Length=473 Score = 80.6 bits (88), Expect = 9e-11 Identities = 130/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 41304 GGGCACCCCGTGGTTCCGATGATGCCCTCGCTGCACTCGGCGACGAGTTCCTTGTCGAGG 41363 |||||||| | || ||| || ||||| || | || || ||| || ||| | | Sbjct 213 GGGCACCCGCTCGTCGCGACGAGGCCCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATG 154 Query 41364 CGGGCGTACTTGCCCATCAGCCCCTCCTGGTAGGAGCGAGACGTGATGCGCATGAGGTTG 41423 || | ||||||||||| ||||||| | | | | | |||| || | |||||| Sbjct 153 CGCGGCCACTTGCCCATCTGCCCCTCGAGCGACGCGAGCGACGACGCCCGGAACAGGTTG 94 Query 41424 TGAAGGCCCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTGTACGCACCGTTACCCGAC 41483 || || ||| |||| || |||||||| ||||||||||||||||||||| |||| Sbjct 93 TGCAGACCCTCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCGCGCCGAG 34 Query 41484 ACGTCGT 41490 ||||||| Sbjct 33 ACGTCGT 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163871031116100