Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3950 280 5e-71 seq3318 163 9e-36 seq2703 129 2e-25 seq2001 100 9e-17 >seq3950 Length=891 Score = 280 bits (310), Expect = 5e-71 Identities = 269/345 (78%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 39449 CTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTG 39508 ||| |||||||| ||| |||| |||| |||||||||| || || |||||||||||||| Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827 Query 39509 AGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGATGTCCTCGAA 39568 || || ||||||||| ||||| ||||||||||||| |||||| |||| ||| ||||| Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767 Query 39569 GTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGAC 39628 ||||||||||||| | |||| || || | |||||| | |||||||||||||||||| || Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707 Query 39629 CGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTT 39688 ||||||||| || | || ||||||||||| | || |||||| || | || Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647 Query 39689 CTCCAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGAT 39748 ||| | |||| ||||| | ||| | ||||||||||| ||||||| | | ||| Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587 Query 39749 CGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAG 39793 |||||||||||| |||||||||||||||||||| | ||||| || Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAG 542 >seq3318 Length=399 Score = 163 bits (180), Expect = 9e-36 Identities = 221/301 (73%), Gaps = 9/301 (3%) Strand=Plus/Plus Query 38926 CGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGT-GCTCCCCGTTGGGGGTG 38984 |||| ||||| |||| | || || ||||||||||| ||| || | ||| |||| Sbjct 105 CGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGGATGTCGCCGCCCACCGC----GGTG 160 Query 38985 AACGA-GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGTGC 39043 ||| || | |||| | |||||| ||||| || || | | ||||||||| Sbjct 161 AACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGGAGCACGGTGATGTGCATGCGCCGGCA 219 Query 39044 CTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTG-AGCGCAGCCG 39102 |||| |||||| ||||| ||||| ||||||||||| ||| | || || |||| Sbjct 220 CTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTCGCGCAC-GCTCTGCAGGAGCGCCG 278 Query 39103 CCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGT 39162 |||||||||| | |||||||| || ||| | ||||||| | |||||| | ||| |||| Sbjct 279 CCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACGCCGTCCAGTACGCCACGAGGCCGT 338 Query 39163 ACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACA 39222 || | || |||||||||||||||||||||||||| ||||| || |||||| |||||| | Sbjct 339 ACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCGCGAACGGTACCAGCGTGTCCCAGA 398 Query 39223 C 39223 | Sbjct 399 C 399 >seq2703 Length=198 Score = 129 bits (142), Expect = 2e-25 Identities = 133/173 (77%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 40368 CCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATG 40427 || || || ||||| || || |||||||| | || || | ||||| |||||| |||| Sbjct 3 CCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGATG 62 Query 40428 AAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 ||||| ||||| |||||||||||| |||||| |||||||||||||| | ||| ||||| Sbjct 63 AAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCTCG 122 Query 40488 TACTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACG 40537 ||||| |||||||| || | ||||| ||||||| |||||||| || Sbjct 123 TACTGCGCCTGCTTGC---GCGCCGCGTCCGGGATGCCGTTGGGGTACCGGCG 172 >seq2001 Length=244 Score = 100 bits (110), Expect = 9e-17 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38573 CTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCGCGCTCGATGGC 38632 ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| || Sbjct 220 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 161 Query 38633 GAGGCGCGGACCCTTGCTCCAGTCC 38657 ||||||| | |||| ||||||| Sbjct 160 GAGGCGCTGCTTCTTGTCCCAGTCC 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163311078164850