Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq3950 257 5e-64 seq3318 174 5e-39 seq2703 123 8e-24 seq2001 86.0 2e-12 >seq3950 Length=891 Score = 257 bits (284), Expect = 5e-64 Identities = 258/335 (77%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 39373 CTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTG 39432 ||| ||||| || ||| |||| |||| | || ||||| || || || ||||||||||| Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827 Query 39433 TGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 39492 ||| | ||||||||| ||||| ||||||||||||| ||||||||||| ||| ||||| Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767 Query 39493 GTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACAC 39552 ||||| ||||||| | |||| || || | |||||| | |||||||||||||||||||| Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707 Query 39553 CGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTT 39612 |||||||||||| || ||||||||||| | || |||||| |||| || Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647 Query 39613 CTCCAGGTCGACGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGAT 39672 ||| | |||| ||||| | ||| ||||||||||| |||||| | | ||| Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587 Query 39673 CGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGA 39707 ||||||||||||||| ||||||||||||||||||| Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTGA 552 Score = 114 bits (126), Expect = 4e-21 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 40010 TTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATC 40069 ||||| |||||||| || | | |||||| | | || | || |||| |||||| | | Sbjct 168 TTGGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGC 109 Query 40070 GCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTAC 40129 || | |||||||| |||| |||| ||||||| ||||| |||| | |||||| Sbjct 108 GCCTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTAC 49 Query 40130 TTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAG 40177 ||||| |||||||||||||||||||| ||||| || || || |||||| Sbjct 48 TTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAG 1 Score = 82.4 bits (90), Expect = 2e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 39791 TCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACC 39850 |||| || || ||| | |||||||| || || ||||||||||||||| ||| || | Sbjct 450 TCGATGAGCGGGTCGCTCGACATGATGACGCCCGCCGCGTGCACGCCCCACTGCCGCTTC 391 Query 39851 AGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTCGTAC 39910 || || |||| || |||| |||| || || || ||| |||| | |||| Sbjct 390 AGCCCCTCGATACCCCGCGCGAGCTCGACGACGCGCTGCGCCTCCGGGTCGGTGTCGTGG 331 Query 39911 AGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTCC 39970 || |||| ||| |||||||| ||| ||| ||||| |||| |||||||||| | Sbjct 330 AGCTGACGGAACTCCGCCGCCTCGGAGTACCGCTCGTGCTTGGGGTCGAAGATCCCCGAC 271 Query 39971 AGGGGCAT 39978 ||||| || Sbjct 270 AGGGGGAT 263 >seq3318 Length=399 Score = 174 bits (192), Expect = 5e-39 Identities = 234/320 (73%), Gaps = 7/320 (2%) Strand=Plus/Plus Query 38830 GATCTCGGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTC 38889 |||| || |||| | | | |||| ||||| |||| | || || ||||||||||| || Sbjct 85 GATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGGATGTC 144 Query 38890 GCTCTCCCCGTTCGGGGTGAAGGA-GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCC 38948 || || | || |||||| || | |||| | |||||| ||||| || || Sbjct 145 GCCGCCCAC---CGCGGTGAACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGGAGCACGG 200 Query 38949 GCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCA 39008 | | ||||||||| |||| |||||| ||||| ||||| ||||||||||| || Sbjct 201 TGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTCGCGCA 260 Query 39009 CCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTG 39067 | | || || | |||||||||||||| | |||||||| || ||| ||| ||||||| Sbjct 261 C-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACGCCGTC 319 Query 39068 CGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAG 39127 | ||| || | ||| |||||| | || ||||||||||||||||||||||| || ||||| Sbjct 320 CAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCGCGAAC 379 Query 39128 GGTACGAGCACGTCCCACAC 39147 ||||| ||| |||||| || Sbjct 380 GGTACCAGCGTGTCCCAGAC 399 >seq2703 Length=198 Score = 123 bits (136), Expect = 8e-24 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 40292 CCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATG 40351 || || |||||||| || || || ||||| | | ||| | |||||||||||| |||| Sbjct 3 CCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGATG 62 Query 40352 AAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 ||||||||||| || |||||||| ||||||||||||||||||||| | ||| ||||| Sbjct 63 AAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCTCG 122 Query 40412 TACTGGAGCTGCTTGC 40427 ||||| |||||||| Sbjct 123 TACTGCGCCTGCTTGC 138 >seq2001 Length=244 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38497 CTCGACCCCGGCCAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38556 ||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 220 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 161 Query 38557 GAGAAGCGGACCCTTCGCCCAGTCC 38581 ||| || | ||| |||||||| Sbjct 160 GAGGCGCTGCTTCTTGTCCCAGTCC 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160392923356050