Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04-
25] 7,075 sequences; 12,875,875 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq3950 257 5e-64
seq3318 174 5e-39
seq2703 123 8e-24
seq2001 86.0 2e-12
>seq3950
Length=891
Score = 257 bits (284), Expect = 5e-64
Identities = 258/335 (77%), Gaps = 0/335 (0%)
Strand=Plus/Minus
Query 39373 CTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTG 39432
||| ||||| || ||| |||| |||| | || ||||| || || || |||||||||||
Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827
Query 39433 TGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 39492
||| | ||||||||| ||||| ||||||||||||| ||||||||||| ||| |||||
Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767
Query 39493 GTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACAC 39552
||||| ||||||| | |||| || || | |||||| | ||||||||||||||||||||
Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707
Query 39553 CGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTT 39612
|||||||||||| || ||||||||||| | || |||||| |||| ||
Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647
Query 39613 CTCCAGGTCGACGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGAT 39672
||| | |||| ||||| | ||| ||||||||||| |||||| | | |||
Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587
Query 39673 CGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGA 39707
||||||||||||||| |||||||||||||||||||
Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTGA 552
Score = 114 bits (126), Expect = 4e-21
Identities = 126/168 (75%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 40010 TTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATC 40069
||||| |||||||| || | | |||||| | | || | || |||| |||||| | |
Sbjct 168 TTGGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGC 109
Query 40070 GCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTAC 40129
|| | |||||||| |||| |||| ||||||| ||||| |||| | ||||||
Sbjct 108 GCCTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTAC 49
Query 40130 TTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAG 40177
||||| |||||||||||||||||||| ||||| || || || ||||||
Sbjct 48 TTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAG 1
Score = 82.4 bits (90), Expect = 2e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 39791 TCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACC 39850
|||| || || ||| | |||||||| || || ||||||||||||||| ||| || |
Sbjct 450 TCGATGAGCGGGTCGCTCGACATGATGACGCCCGCCGCGTGCACGCCCCACTGCCGCTTC 391
Query 39851 AGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTCGTAC 39910
|| || |||| || |||| |||| || || || ||| |||| | ||||
Sbjct 390 AGCCCCTCGATACCCCGCGCGAGCTCGACGACGCGCTGCGCCTCCGGGTCGGTGTCGTGG 331
Query 39911 AGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTCC 39970
|| |||| ||| |||||||| ||| ||| ||||| |||| |||||||||| |
Sbjct 330 AGCTGACGGAACTCCGCCGCCTCGGAGTACCGCTCGTGCTTGGGGTCGAAGATCCCCGAC 271
Query 39971 AGGGGCAT 39978
||||| ||
Sbjct 270 AGGGGGAT 263
>seq3318
Length=399
Score = 174 bits (192), Expect = 5e-39
Identities = 234/320 (73%), Gaps = 7/320 (2%)
Strand=Plus/Plus
Query 38830 GATCTCGGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTC 38889
|||| || |||| | | | |||| ||||| |||| | || || ||||||||||| ||
Sbjct 85 GATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGGATGTC 144
Query 38890 GCTCTCCCCGTTCGGGGTGAAGGA-GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCC 38948
|| || | || |||||| || | |||| | |||||| ||||| || ||
Sbjct 145 GCCGCCCAC---CGCGGTGAACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGGAGCACGG 200
Query 38949 GCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCA 39008
| | ||||||||| |||| |||||| ||||| ||||| ||||||||||| ||
Sbjct 201 TGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTCGCGCA 260
Query 39009 CCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTG 39067
| | || || | |||||||||||||| | |||||||| || ||| ||| |||||||
Sbjct 261 C-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACGCCGTC 319
Query 39068 CGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAG 39127
| ||| || | ||| |||||| | || ||||||||||||||||||||||| || |||||
Sbjct 320 CAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCGCGAAC 379
Query 39128 GGTACGAGCACGTCCCACAC 39147
||||| ||| |||||| ||
Sbjct 380 GGTACCAGCGTGTCCCAGAC 399
>seq2703
Length=198
Score = 123 bits (136), Expect = 8e-24
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 40292 CCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATG 40351
|| || |||||||| || || || ||||| | | ||| | |||||||||||| ||||
Sbjct 3 CCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGATG 62
Query 40352 AAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411
||||||||||| || |||||||| ||||||||||||||||||||| | ||| |||||
Sbjct 63 AAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCTCG 122
Query 40412 TACTGGAGCTGCTTGC 40427
||||| ||||||||
Sbjct 123 TACTGCGCCTGCTTGC 138
>seq2001
Length=244
Score = 86.0 bits (94), Expect = 2e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 38497 CTCGACCCCGGCCAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38556
||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 220 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 161
Query 38557 GAGAAGCGGACCCTTCGCCCAGTCC 38581
||| || | ||| ||||||||
Sbjct 160 GAGGCGCTGCTTCTTGTCCCAGTCC 136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160392923356050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |