Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq3950 309 1e-79 seq3318 185 3e-42 seq2703 120 1e-22 >seq3950 Length=891 Score = 309 bits (342), Expect = 1e-79 Identities = 278/349 (80%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 38280 CTCGGGGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTG 38339 ||| |||||||| ||| ||||| |||| | ||||||||||| || |||||||||||||| Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827 Query 38340 CGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 38399 |||| |||||||||||| ||||| ||||||||||||| ||||||||||| ||| ||||| Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767 Query 38400 CTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAAGAC 38459 || ||||||||||| | |||| || || | |||||| | |||||||||||||||||| || Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707 Query 38460 CGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTT 38519 ||| ||||| || | || ||||||||||| | ||| |||||| |||| || Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647 Query 38520 CTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGAT 38579 |||||| |||| |||| | ||| ||||||||||| ||||||| | | ||| Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587 Query 38580 CGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCC 38628 |||||||||||| |||||||||||||||||||| | ||||| ||| || Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAGGCCC 538 Score = 104 bits (114), Expect = 7e-18 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 38689 GGGATGTGGTCGACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATC 38748 |||||| ||||| ||||| ||| |||||||| || || || |||||||||||| | Sbjct 459 GGGATGATGTCGATGAGCGGGTCGCTCGACATGATGACGCCCGCCGCGTGCACGCCCCAC 400 Query 38749 TGCCGGACGAGTCCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCG 38808 ||||| || || |||| || |||||||| |||| ||| || ||| ||| |||| Sbjct 399 TGCCGCTTCAGCCCCTCGATACCCCGCGCGAGCTCGACGACGCGCTGCGCCTCCGGGTCG 340 Query 38809 TTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTG 38868 | |||| ||| |||| ||| |||||||| ||| ||| ||||| |||| | | Sbjct 339 GTGTCGTGGAGCTGACGGAACTCCGCCGCCTCGGAGTACCGCTCGTGCTTGGGGTCGAAG 280 Query 38869 ATGCCCTCCAGGGGCAT 38885 || ||| |||||| || Sbjct 279 ATCCCCGACAGGGGGAT 263 Score = 96.9 bits (106), Expect = 1e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 38917 TTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATC 38976 ||||| |||||||| || | | |||||| | | || | || |||| |||||| | | Sbjct 168 TTGGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGC 109 Query 38977 GCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTAC 39036 || | |||||||| ||||| || ||||||| ||||| ||| ||||||| Sbjct 108 GCCTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTAC 49 Query 39037 TTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAG 39084 ||||| |||||||||||||| || || || || ||||| || |||||| Sbjct 48 TTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAG 1 >seq3318 Length=399 Score = 185 bits (204), Expect = 3e-42 Identities = 238/324 (73%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 37733 GGACGATCTCATCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGA 37792 ||| |||| | ||||| | | | |||| ||||| |||| | || || |||||||||| Sbjct 81 GGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGGA 140 Query 37793 TCTC-CCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACGTCGGGCGGCAGG 37851 | || |||| | ||| |||||| | |||| | |||||| ||||| || Sbjct 141 TGTCGCCGCCCACCGC----GGTGAACTTCGCCGCCGAGTCGTTCACGTCCGGCGGGAGC 196 Query 37852 ACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCG 37911 || | | |||||||| ||||||| |||||| ||||| ||||| |||||||||| Sbjct 197 ACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTCG 256 Query 37912 CCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGC 37970 | ||| | || || | |||||||||||||| | |||||||| || ||| ||| |||| Sbjct 257 CGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACGC 315 Query 37971 CGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGC 38030 ||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || || Sbjct 316 CGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCGC 375 Query 38031 GAAGGGTACGAGCACGTCCCACAC 38054 ||| ||||| ||| |||||| || Sbjct 376 GAACGGTACCAGCGTGTCCCAGAC 399 >seq2703 Length=198 Score = 120 bits (132), Expect = 1e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 39197 AGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGA 39256 |||| || || ||||| || || |||||||| | | ||| | ||||| |||||| || Sbjct 1 AGCCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGA 60 Query 39257 TGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCT 39316 ||||||||||||| |||||||||||| |||||| ||||||||| |||| | ||| ||| Sbjct 61 TGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCT 120 Query 39317 CGTACTCGACCTGCGTGCG 39335 |||||| ||||| |||| Sbjct 121 CGTACTGCGCCTGCTTGCG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159701781427650