Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq3950 311 3e-80 seq3318 190 7e-44 seq2703 111 5e-20 seq6785 96.9 1e-15 >seq3950 Length=891 Score = 311 bits (344), Expect = 3e-80 Identities = 276/345 (80%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 38713 CTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTG 38772 ||| |||||||| ||| ||||| |||| ||||||||||||| || |||||||||||||| Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827 Query 38773 CGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAA 38832 |||| |||||||||||| ||||| ||||||||||| | |||||| |||| ||| ||||| Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767 Query 38833 CTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAACAC 38892 || ||||||||||| | |||| || || | |||||| | ||||||||||||||||||||| Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707 Query 38893 CGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTT 38952 ||||||||| || | || ||||||||||||| ||| ||| || |||| || Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647 Query 38953 CTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGAT 39012 |||||| |||| |||| | ||| ||||||||||| ||||||| | | ||| Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587 Query 39013 CGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAG 39057 |||||||||||| |||||||||||||||||||| | ||||| || Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAG 542 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 39350 TTGGTCAGCTTCTCGCCGACCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATC 39409 ||||| |||||||| || | | ||||| | | || | || |||| |||||| | | Sbjct 168 TTGGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGC 109 Query 39410 GCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTAC 39469 || | ||||||||| ||||||| || ||||||| ||||| |||| ||||||| Sbjct 108 GCCTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTAC 49 Query 39470 TTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAG 39517 ||||| |||||||||||||| || || || || ||||| || |||||| Sbjct 48 TTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAG 1 Score = 98.7 bits (108), Expect = 3e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 39120 TCGGGATGTGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCA 39179 |||||||| |||| ||||| ||| |||||||| || || || |||||||||||| Sbjct 461 TCGGGATGATGTCGATGAGCGGGTCGCTCGACATGATGACGCCCGCCGCGTGCACGCCCC 402 Query 39180 TCTGCCGGACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGT 39239 |||||| || || |||| || |||||||| || | ||| || ||| ||| || Sbjct 401 ACTGCCGCTTCAGCCCCTCGATACCCCGCGCGAGCTCGACGACGCGCTGCGCCTCCGGGT 342 Query 39240 CGTTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGG 39299 || | |||| ||| |||| ||| |||||||| ||| ||| ||||| |||| | Sbjct 341 CGGTGTCGTGGAGCTGACGGAACTCCGCCGCCTCGGAGTACCGCTCGTGCTTGGGGTCGA 282 Query 39300 TGATGCCCTCCAGGGGCAT 39318 ||| ||| |||||| || Sbjct 281 AGATCCCCGACAGGGGGAT 263 >seq3318 Length=399 Score = 190 bits (210), Expect = 7e-44 Identities = 239/324 (74%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 38166 GGACGATCTCCTCGACCATGCTCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGA 38225 ||| |||| | ||||| | | || |||| ||||| |||| | || || |||||||||| Sbjct 81 GGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGGA 140 Query 38226 TCTC-CCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACGTCGGGCGGCAGG 38284 | || |||| | ||| |||||| | |||| | |||||| ||||| || Sbjct 141 TGTCGCCGCCCACCGC----GGTGAACTTCGCCGCCGAGTCGTTCACGTCCGGCGGGAGC 196 Query 38285 ACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCG 38344 || | | |||||||| ||||||| |||||| ||||| ||||| |||||||||| Sbjct 197 ACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTCG 256 Query 38345 CCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGC 38403 | ||| | || || | |||||||||||||| | |||||||| || ||| ||| |||| Sbjct 257 CGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACGC 315 Query 38404 CGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGC 38463 ||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || || Sbjct 316 CGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCGC 375 Query 38464 GAAGGGTACGAGCACGTCCCACAC 38487 ||| ||||| ||| |||||| || Sbjct 376 GAACGGTACCAGCGTGTCCCAGAC 399 >seq2703 Length=198 Score = 111 bits (122), Expect = 5e-20 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39630 AGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGA 39689 |||| || || |||||||| || |||||||| | | || | ||||| |||||| || Sbjct 1 AGCCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGA 60 Query 39690 TGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCT 39749 ||||||||||||| |||||||||||| |||||| ||||||||| |||| | ||| ||| Sbjct 61 TGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCT 120 Query 39750 CGTA 39753 |||| Sbjct 121 CGTA 124 >seq6785 Length=208 Score = 96.9 bits (106), Expect = 1e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 40639 CAGGTTGCCGTGGTCGGTCATCGCGAGGGCCTTCATGCCCTGCGC-CTTGGCCTCGGCGA 40697 || || ||||||||| ||| |||||| ||||||| ||||| || || | ||||| ||| Sbjct 207 CACGTAGCCGTGGTCCGTCGTCGCGATGGCCTTC-TGCCCCAGGCGCTCGACCTCGTCGA 149 Query 40698 ACATGTCCTTCAGTCGAGCCGCCCCGTCGAGAAGGCTGTACTCGGAGTGGACATGCAGGT 40757 ||| |||| | || ||||| ||||| || | |||||||| |||||| || |||| Sbjct 148 ACAGGTCCCCGATCCGGGCCGCGCCGTCCAGCATCGAGTACTCGGTGTGGACGTGGAGGT 89 Query 40758 GGACGAAGTCCT 40769 |||||||||||| Sbjct 88 GGACGAAGTCCT 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160226537336250