Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177975.1_202017-04- 25] 7,075 sequences; 12,875,875 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq3950 280 5e-71 seq3318 163 9e-36 seq2703 120 1e-22 seq2001 82.4 2e-11 >seq3950 Length=891 Score = 280 bits (310), Expect = 5e-71 Identities = 262/333 (79%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 39365 CTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTG 39424 ||| |||||||| ||| |||| |||| ||||||||||||| || |||||||||||||| Sbjct 886 CTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTG 827 Query 39425 CGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGAA 39484 |||| || ||||||||| ||||| ||||||||||||| |||||| || ||| ||||| Sbjct 826 CGAGTTCATGCCCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAA 767 Query 39485 GTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGAC 39544 ||||||||||||| | |||| || || | |||||| | |||||||||||||||||| || Sbjct 766 CTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACAC 707 Query 39545 CGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTT 39604 ||||||||| || | || ||||||||||| | || |||||| |||| || Sbjct 706 GCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGA 647 Query 39605 CTCCAGGTCGACGTGCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGAT 39664 ||| | |||| ||||| | ||| ||||||||||| ||||||| | | ||| Sbjct 646 CTCGATCTCGATCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGAT 587 Query 39665 CGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTT 39697 |||||||||||| |||||||||||||||||||| Sbjct 586 CGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTT 554 Score = 91.5 bits (100), Expect = 5e-14 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 40002 TTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATC 40061 ||||| |||||||| || | | |||||| | | || | ||||||| |||||| | | Sbjct 168 TTGGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGC 109 Query 40062 GCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTAC 40121 || | |||||||| ||| |||| ||||||| ||||| ||| | |||||| Sbjct 108 GCCTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTAC 49 Query 40122 TTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAG 40169 ||||| |||||||||| ||| || || || || || || || |||||| Sbjct 48 TTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAG 1 >seq3318 Length=399 Score = 163 bits (180), Expect = 9e-36 Identities = 172/221 (78%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 38921 CACGTCGGGCGGCAGGACG-TGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCA 38979 |||||| ||||| || ||| ||| || | || ||||| |||| |||||| ||||| Sbjct 181 CACGTCCGGCGGGAGCACGGTGATGTGC-ATGCGCCGGCACTCGTTGAGGTAGAGGGCCA 239 Query 38980 TCTTGTTCTTGTCGTCGCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAG 39038 ||||| ||||||||||| ||| | || || | |||||||||||||| | ||||||| Sbjct 240 GCTTGTCCTTGTCGTCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAG 298 Query 39039 TGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTG 39098 | || ||| ||| ||||||| | ||| || | ||| |||||| | || |||||||||||| Sbjct 299 TTCGCCTTGAGGAACGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTG 358 Query 39099 TTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACAC 39139 ||||||||||| || ||||| ||||| ||| |||||| || Sbjct 359 TTGAAGGCGTAGCCCGCGAACGGTACCAGCGTGTCCCAGAC 399 >seq2703 Length=198 Score = 120 bits (132), Expect = 1e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 40284 CCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATG 40343 || || ||||||||||| || || ||||| | | ||| | |||||||||||| |||| Sbjct 3 CCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTGATG 62 Query 40344 AAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 ||||||||||| || |||||||| |||||| |||| ||||||||| | ||| ||||| Sbjct 63 AAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTCTCG 122 Query 40404 TACTGAAGCTGCTTGC 40419 ||||| |||||||| Sbjct 123 TACTGCGCCTGCTTGC 138 >seq2001 Length=244 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38489 CTCCAGCCCGGCAAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38548 ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 220 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 161 Query 38549 GAGAAGCGGACCCTTCGCCCAGTCC 38573 ||| || | ||| |||||||| Sbjct 160 GAGGCGCTGCTTCTTGTCCCAGTCC 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160127345670600