Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177985.1_202017-04- 25] 2,056 sequences; 11,515,417 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1034 95.1 9e-15 seq1543 89.7 4e-13 >seq1034 Length=15365 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| |||||||| || | || || ||||| || || || |||||| ||||| ||| | Sbjct 8442 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATC 8501 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | || || | | | || | ||| || || || || || ||| | ||||| Sbjct 8502 TTCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTG- 8560 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 ||||||| ||| | ||||||||||| || ||| | |||||| | |||| || |||| Sbjct 8561 --ACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGA 8618 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||| || || |||||||||||||| || |||| || Sbjct 8619 CTACAACATCCAAAAGGAATCTACTCTACACTTGGTCTT 8657 >seq1543 Length=21964 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| ||| | ||| | ||||||||| | || |||||||| || ||||||||| Sbjct 10230 GATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAGCAACTAGAA 10289 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| | ||| || | || ||||| || || ||||||||||||||||| |||| || Sbjct 10290 GATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCACTTGGTGTT 10348 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || || || || |||||||| || | || ||| || | Sbjct 9681 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 9740 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | ||||| ||||| || || || ||| | ||| | | ||| Sbjct 9741 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 9800 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| || || || |||||||| | ||| || | || ||||| Sbjct 9801 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 9860 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || || ||||||||||||||||| |||| || Sbjct 9861 ATCCAAAAGGAATCTACTCTTCACTTGGTGTT 9892 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || ||| | || || || || || ||| | || ||| | | Sbjct 10365 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 10424 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| |||||| || || || ||| | ||| | |||| Sbjct 10425 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 10484 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || ||||| || || |||||||||||| | ||| || | || |||||| Sbjct 10485 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 10544 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||| ||||| || |||||||| Sbjct 10545 ATTCAAAAGGAGTCCACTCTTCA 10567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358115826287824