Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177985.1_202017-04- 25] 2,056 sequences; 11,515,417 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1179 143 2e-29 seq624 96.9 3e-15 >seq1179 Length=20700 Score = 143 bits (158), Expect = 2e-29 Identities = 449/690 (65%), Gaps = 34/690 (5%) Strand=Plus/Plus Query 19246 GGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT--GTCGCGTGTTT 19303 || || ||| |||||||||| || |||| || | ||||| |||| |||| | ||| Sbjct 15612 GGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGAGCGTTTGCAAGTCGAATCTTT 15671 Query 19304 TTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT-- 19360 || | ||| | || || || |||| | |||||| || |||||| | Sbjct 15672 CCTCCTTCAGTT---ATAGAAAAACTGGGTATTTCTCATGTTAAAGG---TTTGCTATTG 15725 Query 19361 -ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 | || || || ||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 15726 TACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 15785 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || |||||||| ||||| || | ||| || || ||| Sbjct 15786 GCTAAAGAGCC---CAAAATCGTCAATGGTCCAGAAATTTTGAGTAAGTACGTTGGTTCT 15842 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA-----AACGTT 19531 || |||||||| | || ||| ||| || || |||| |||| | | || | | Sbjct 15843 TCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGAATATAGGGCCAAGGGT 15902 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 ||| || ||| || || ||||| || | ||||| |||| | | | |||| Sbjct 15903 GAGG-----AATCTTCCTTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGC 15957 Query 19592 AAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 | |||||||| || || | ||| ||| |||| ||| || |||||| | | Sbjct 15958 AGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAG 16017 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 | ||| | || |||||| | ||| ||||||||||||| |||||||| ||||| ||| | Sbjct 16018 CTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATTGGTATGACCAATCGTA 16077 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 || ||||||||||| || | || || || ||| | || ||| | | | |||||| Sbjct 16078 AAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTC 16137 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGAC 19825 | |||||||||||| ||| | | ||||||| |||| || || | ||| | Sbjct 16138 ATTTACCCGATGAAAAAGGAAGACTCCAAATTTTCGACATTCAGACGAAGAAAATGAGGG 16197 Query 19826 AAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 ||||||| | | | |||||||| | ||| || | || || || ||||||| Sbjct 16198 AAAATAATATGATGAGCGACGATGTTAACTTAGCTGAGTTAGCTGCATTAACAAAAAACT 16257 Query 19886 ATAGCGGCGCAGAACTTGAGGGATTAGTGA 19915 || || || ||||||| ||||||| Sbjct 16258 TCTCTGGTGCTGAGATTGAGGGTTTAGTGA 16287 >seq624 Length=14724 Score = 96.9 bits (106), Expect = 3e-15 Identities = 358/561 (64%), Gaps = 45/561 (8%) Strand=Plus/Plus Query 40829 ATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGG 40888 |||||| || || || || |||||||| | | ||| ||||| || || |||||||| Sbjct 11986 ATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTTTATGG 12045 Query 40889 ATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGAT---TATACCAA 40945 |||||| | | | |||||||| || ||||| | || || | ||| ||||| Sbjct 12046 ATTTCAATGGAGGCATTTTGGTGCTAAATACAAGAC---GTGCGATGACGACTATACTGG 12102 Query 40946 TAAAGGAATGGATCAATT---ACAGTGCGTTATAGATACGATTAAATCCGATCCC---GA 40999 |||| || |||||||| |||| ||||| ||| | || | ||||| || Sbjct 12103 ACAAGGTATTGATCAATTGAAACAG---GTTATTCATAAACTAAAGACAAATCCCTACGA 12159 Query 41000 TAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCC 41059 ||| || || || || | || ||||||||| | || | | ||||| ||||| Sbjct 12160 TAGAAGA---ATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCTTTGCC 12216 Query 41060 ACCTTGTCATTTGTTATGTCAGTTTTACGTTTG------CAATG---GTGAA-------- 41102 ||| || ||| | || | ||||| || || | ||| | | ||| Sbjct 12217 ACCATGCCATATTTTTTCACAGTTCTATGTCAGTTTCCCCAAAGAAGGAGAAGGATCCGG 12276 Query 41103 ----------CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCC 41152 || ||||| |||||| ||| | || |||| ||||| | || || || Sbjct 12277 TAAGCCCCGCCTTTCATGCTTATTGTACCAACGTTCTTGTGATATGGGGTTGGGAGTACC 12336 Query 41153 GTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 |||||||| || |||||| || | || |||||||| | ||| | | | | Sbjct 12337 ATTTAACATTGCATCATATGCTTTGTTGACTAGAATGATTGCTAAAGTTGTCGACATGGA 12396 Query 41213 ACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 || ||||| || |||| || || || |||| |||| |||| | | ||||| || | Sbjct 12397 GCCAGGTGAGTTCATTCATACTTTGGGGGATGCACATGTTTATAAAGACCACATTGATGC 12456 Query 41273 GTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGC 41332 || | ||||||| | | |||| || |||||||| || | ||| |||||| | | Sbjct 12457 CTTGAAAGAACAAATCTCCAGAAATCCAAGACCATTCCCGAAACTAAAGATTAAAAGGGA 12516 Query 41333 TGTTGAAAACATTGATGATTT 41353 ||| || ||||||||||||| Sbjct 12517 CGTTAAAGACATTGATGATTT 12537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446040746280