Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177995.1_202017-04- 25] 1,509 sequences; 11,584,921 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1366 86.0 4e-12 seq603 86.0 4e-12 seq600 82.4 5e-11 >seq1366 Length=22619 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | ||| ||||| || | || || || ||||| || ||||| || | Sbjct 8708 CACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 8649 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||||| | || ||||||||||| ||| ||| || || | ||| ||||| | | Sbjct 8648 ACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 8589 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || ||| || || | | ||| ||||| | || || Sbjct 8588 GAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 8529 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | ||||| || || || || || || | ||| || |||||||||||||| || Sbjct 8528 CTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8477 >seq603 Length=424 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | || || || ||||| || ||||| |||||||| | || || Sbjct 1 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTC 60 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 | |||||| ||| ||| || || | || || |||| || || |||||||| || Sbjct 61 TAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTG 120 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| ||| || | | ||| |||||| | || ||| || || ||||| || || Sbjct 121 AATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTT 180 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||||||| |||||||||||||| Sbjct 181 CCCTGTTAGAGTTTTGACGAAAATTTGCAT 210 >seq600 Length=53727 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| || || ||||| || || |||||||| || ||||| ||||| Sbjct 35975 ACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 36034 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | ||| ||||||||||| ||| ||| || || | ||| ||||| | || Sbjct 36035 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 36094 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| || || | | ||| ||||| | || ||| Sbjct 36095 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 36154 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAA 33361 |||| ||| || || || || || | ||| || || ||| Sbjct 36155 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 36194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318771737381082