Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178025.1_202017-04- 25] 7,290 sequences; 12,699,436 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1339 140 2e-28 >seq1339 Length=16980 Score = 140 bits (154), Expect = 2e-28 Identities = 325/479 (68%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 101863 ACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGA 101922 || |||||| || || || | ||| || || ||||| ||||||| || || | Sbjct 12374 ACTGACATAGAACTGTGAAAAAATATGGCATGGTGGCAAAGCCATTTTGTCAAAATCAGC 12315 Query 101923 AACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGG-TTTGTTTTTATAGTATCAA 101981 ||||| |||| ||| | || |||||||| |||||| ||||| |||| ||| || Sbjct 12314 TGGGTTCCAGGCACTCATAATGATTCTTCTATC-GTAGGGATTTGTCTTTAGTTTATGAA 12256 Query 101982 TCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCT-TTATAT 102040 | | |||||| ||||| |||| |||| ||| |||| ||| | ||| | || ||| Sbjct 12255 TAACCTGTTTCAATTGATCAATACCTTGTCCAGTATAGTCGTCATCG-CACGTCTTGTAT 12197 Query 102041 TCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTG 102100 | || || ||||||||||| ||||||||||| || || || ||||||||| | | || Sbjct 12196 TTAGCACCAAAATGCCTCCATTGAAATCCATAAACGGGCCCCAGATCTCCTACTTTCCTA 12137 Query 102101 TCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACG 102160 || | || || | ||||||||| || | ||||||||| | |||||||| | || Sbjct 12136 TCTTTGAACCCCATCTTATCTAAATATTCACGAGATCCATTACCGTCCCAAATCTTAACA 12077 Query 102161 CC-AGCT--GCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCT 102217 || ||| | |||| || || ||| ||| || | ||||||||| ||||| Sbjct 12076 CCTTGCTCAGACAATAG--GTTAGC-GTCTGTATCACCGGCCAAAAACCACAATAGTTCA 12020 Query 102218 TCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA---TTCATTTTCT 102274 | | |||||| ||| || |||| || |||| ||||| || |||| | Sbjct 12019 AGTATGATACCTCTAGTAAAGACCTTCTTGGTCGTTAGTAGTGGGAAGGTATCATCACGT 11960 Query 102275 AAACTAAACCTAGACT---GTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTC 102330 |||||||| | || ||| | |||||| ||||| || ||||| |||||||| || Sbjct 11959 AAACTAAAACGCAGCTGGGGTGGTGCAAAAAGACTCAACGTACCAGTGCCTGTTCTATC 11901 Score = 102 bits (112), Expect = 6e-17 Identities = 212/313 (68%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 101542 CATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCA-TCTGCTT 101600 ||| | ||||| |||| | || || || ||||| | ||| | | || ||| || ||| Sbjct 12787 CATTTTCATTTGAATTCTTGGATGAGGATTATAATCTTCAATTTCAAAGTCTGTCAACTT 12728 Query 101601 TAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTAGGAG 101660 ||| ||||||||| | ||| | || || | ||| | || || ||||| ||| Sbjct 12727 GAAA-TCATCAATGTCTTTAACGTCCCTTTTAATCTTTAGTTTCGGGAATGGTCTTGGAT 12669 Query 101661 TTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTA 101720 ||| | | || ||| | ||||||||||| ||| ||| | || ||||| || | Sbjct 12668 TTCTGGAGATTTGTTCTTTCAAGGCATCAATGTGGTCTTTATAAACATGTGCATCCCCCA 12609 Query 101721 TAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAA 101780 |||||| || ||||| || ||| | | | || | ||||||||| | ||| || | Sbjct 12608 AAGTATGAATGAACTCACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACA 12549 Query 101781 GAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACA 101840 || ||| |||||||||||||| ||||| |||||||||||| || | ||| |||| Sbjct 12548 AAGCATATGATGCAATGTTAAATGGTACTCCCAACCCCATATCACAAGAACGTTGGTACA 12489 Query 101841 GTTGACAGGAAAG 101853 | || ||||| Sbjct 12488 ATAAGCATGAAAG 12476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361219103959790