Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178025.1_202017-04- 25] 7,290 sequences; 12,699,436 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq212 114 2e-20 seq1389 113 7e-20 seq1390 111 2e-19 seq1339 111 2e-19 seq1857 98.7 1e-15 seq2088 93.3 6e-14 >seq212 Length=9500 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| | || || || || || ||| | || ||||| | ||| || ||| Sbjct 8974 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 9033 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || |||||||| || |||||||| |||||||| |||||||| | Sbjct 9034 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 9093 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || ||||| || || ||||| || || || |||| || || || || ||||||||| Sbjct 9094 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 9153 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || || || | || |||||||||| Sbjct 9154 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 9194 >seq1389 Length=207 Score = 113 bits (124), Expect = 7e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124572 ACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAA 124631 |||||||| ||||| ||||| | || || ||| || | ||| || |||||| Sbjct 2 ACTATAACCCTAGAGGTTGAATCTTCCGACACTATTGACAACGTCAAAAGTAAGATTCAA 61 Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 |||||||||||||| || || |||||||| || | |||||||| || || ||| |||| Sbjct 62 GATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAGCAACTAGAA 121 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 ||| || |||| || || || || || ||||| ||||| ||| | || ||||| || Sbjct 122 GATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCACTTGGTGTTG 181 Query 124752 CGTTTACGAGGTGGTATTAAAAATT 124776 | || |||||||||| ||| || Sbjct 182 AGATTGAGAGGTGGTATGCAAATTT 206 >seq1390 Length=174 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| || |||||||| || || ||||||||||| | |||||||| || || Sbjct 174 AAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCCGGTAAG 115 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || || |||| | |||||||| ||||| ||||| || || |||||| Sbjct 114 CAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAGTCTACGTTGCAT 55 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || | || |||||||||| ||| || Sbjct 54 TTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 21 >seq1339 Length=16980 Score = 111 bits (122), Expect = 2e-19 Identities = 199/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| || ||| |||| ||| || ||||| | | |||| || |||| ||| || Sbjct 12370 ACATAGAACTGTGAAAAAATATGGCATGGTGGCAAAGCCATTTTGTCAAAATCAGCTGGG 12311 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 |||||||| | | || || ||||| | || || | |||| ||||| |||| Sbjct 12310 TTCCAGGCACTCATAATGATTCTTCTATCGTAGGGATTTGTCTTTAGTTTATGAATAACC 12251 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAATATATTTAGC 205739 ||| | |||||||||| ||||| ||||| | ||| || || | |||||||| Sbjct 12250 TGTTTCAATTGATCAATACCTTGTCCAGTATAGTCGTCATCGCACGTCT-TGTATTTAGC 12192 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799 ||||||||| | ||||||||| |||||||| || || | ||| ||| |||| ||||| || Sbjct 12191 ACCAAAATGCCTCCATTGAAATCCATAAACGGGCCCCAGATCTCCTACTTTCCTATCTTT 12132 Query 205800 AAAACCACGtttttttATATATTTTAATGATCCATTTTCATCCCAAAT 205847 || || || | || ||||| |||||||| | |||||||| Sbjct 12131 GAACCCCATCTTATCTAAATATTCACGAGATCCATTACCGTCCCAAAT 12084 >seq1857 Length=10065 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| ||||| || |||||||| ||||| ||||| | | Sbjct 9928 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 9987 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || |||||||||||| || |||||||| || || |||||| Sbjct 9988 GACACTATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 10047 Query 124659 CAAAGGCTTATTTTTGC 124675 ||||| | |||||||| Sbjct 10048 CAAAGATTGATTTTTGC 10064 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| ||||| | || ||||| | Sbjct 9472 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 9531 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || |||||||||||| || |||||||| || || |||||| Sbjct 9532 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 9591 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || || |||| || || |||| | ||||| || Sbjct 9592 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 9651 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || || ||| | || || | || |||||||||| Sbjct 9652 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTAT 9701 >seq2088 Length=263 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 124569 AAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATT 124628 || |||||||| ||||| ||||| | ||| || ||| || | || ||||||| Sbjct 263 AAGACTATAACCCTAGAGGTTGAATCTTCTGACACTATTGACAACGTTAAGTCGAAAATT 204 Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 ||||| || |||||||| || || || || ||||| | |||||||| || || ||| || Sbjct 203 CAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAAGCAACTA 144 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| || |||| | || || ||||||||||| || || ||| | || | || Sbjct 143 GAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTCCACTCTTCACCTTGTC 84 Query 124749 TTACGTTTACGAGGTGGTA 124767 || | || | ||||||| Sbjct 83 TTGAGGTTGAGGGGTGGTA 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755387159072000