Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178025.1_202017-04- 25] 7,290 sequences; 12,699,436 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1857 134 2e-26 seq1389 134 2e-26 seq1390 125 1e-23 seq1299 120 4e-22 seq2088 118 2e-21 seq1335 111 2e-19 seq212 107 3e-18 >seq1857 Length=10065 Score = 134 bits (148), Expect = 2e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 155810 TTTATGTAATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| ||||| | ||||| || || | || || ||||| || ||||| || ||||| Sbjct 9457 TTTAACTAATAGATTATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTG 9516 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 9517 GAAGTTGAATCTTCCGATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGT 9576 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || |||||||| |||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 9577 ATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACG 9636 Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047 | || ||||| || || || ||| | || | ||| | ||| |||| ||||||| Sbjct 9637 CTGTCTGATTACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGT 9696 Query 156048 GGT 156050 ||| Sbjct 9697 GGT 9699 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || ||||| || || ||||| || ||| || Sbjct 9700 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 9759 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || || ||||| || |||||||| ||| Sbjct 9760 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 9819 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||||||||| ||||| ||||| || || || || | Sbjct 9820 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACA-- 9877 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || ||||| ||||| ||||| ||| Sbjct 9878 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 9927 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 9928 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 9987 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||||| ||||| || ||||| || |||||||| ||| Sbjct 9988 GACACTATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 10047 Query 155943 CAAAGATTGATTTATGCC 155960 ||||||||||||| |||| Sbjct 10048 CAAAGATTGATTTTTGCC 10065 >seq1389 Length=207 Score = 134 bits (148), Expect = 2e-26 Identities = 149/197 (76%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 155856 ACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAA 155915 ||||| || |||| || ||| ||| || | |||| ||||| |||| ||| || ||| Sbjct 2 ACTATAACCCTAGAGGTTGAATCTTCCGACACTATTGACAACGTCAAAAGTAAGATTCAA 61 Query 155916 GATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAA 155975 ||||||||||| || ||||| || ||||| |||||||||| ||| |||||||| || ||| Sbjct 62 GATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAGCAACTAGAA 121 Query 155976 GATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGT 156033 ||| ||||| || || || || | | ||||||| || | || ||||| || |||| Sbjct 122 GATGGTAGAACCTTGTCTGACTACA--ACATCCAAAAGGAATCTACTCTTCACTTGGTGT 179 Query 156034 TAAGATTAAGAGGCGGT 156050 | ||||| ||||| ||| Sbjct 180 TGAGATTGAGAGGTGGT 196 >seq1390 Length=174 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| ||||| || ||||| || |||||||| |||||||||||||||| |||||||||| Sbjct 174 AAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCCGGTAAG 115 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 || || ||||| ||||| | || |||||||| || |||||| | ||| | ||| Sbjct 114 CAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAGTCTACGTTGCAT 55 Query 156027 TTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| ||||| ||||| ||| Sbjct 54 TTGGTGTTGAGATTGAGAGGTGGT 31 >seq1299 Length=15568 Score = 120 bits (132), Expect = 4e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 7059 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 7000 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || || || ||||| || ||||| || || || || Sbjct 6999 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 6940 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 6939 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 6880 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 6879 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 6828 >seq2088 Length=263 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 155853 AAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATA 155912 || ||||| || |||| || ||| |||||| | |||| ||||| || ||||| Sbjct 263 AAGACTATAACCCTAGAGGTTGAATCTTCTGACACTATTGACAACGTTAAGTCGAAAATT 204 Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 ||||| || ||||| || |||||||| || ||||||||||||| |||||||||||| || Sbjct 203 CAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAAGCAACTA 144 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 |||||| ||||| | || || || ||||| || ||| ||| | || ||||| | || Sbjct 143 GAAGATGGTAGAACGCTGTCGGACTACAATAT-TCAAAAGGAGTCCACTCTTCACCTTGT 85 Query 156032 GTTAAGATTAAGAGGCGGT 156050 || || || || || ||| Sbjct 84 CTTGAGGTTGAGGGGTGGT 66 >seq1335 Length=21199 Score = 111 bits (122), Expect = 2e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || |||||||| || || || || || ||||| ||| |||||| | ||| | Sbjct 17123 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 17182 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || ||||| || || || || |||||||||||||| | Sbjct 17183 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 17242 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013 ||| |||||||| | ||||| |||||| |||| || || | | ||||||| || Sbjct 17243 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACA--ACATCCAAAAGGA 17300 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || | ||||| || || ||||||||||| ||| Sbjct 17301 ATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGT 17337 >seq212 Length=9500 Score = 107 bits (118), Expect = 3e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | || || |||||||| || || || || || ||||| ||| |||||| | |||| Sbjct 8974 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 9033 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || || ||||| || ||||| || || || || |||||||||||| Sbjct 9034 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 9093 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| |||||||| | ||||| ||||| || || || || || || ||| Sbjct 9094 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 9153 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | || | || ||||| || ||||| ||||| ||| Sbjct 9154 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGT 9192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731805308164000