Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178025.1_202017-04- 25] 7,290 sequences; 12,699,436 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1857 170 2e-37 seq1299 150 2e-31 seq1389 129 5e-25 seq1390 109 5e-19 seq212 109 5e-19 seq1335 104 2e-17 seq2088 98.7 9e-16 >seq1857 Length=10065 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | ||||||||||| || || | || || ||| || || Sbjct 9700 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 9759 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 9760 GACACGATCGATAACGTTAAGTCGAAA-ATCCAGGACAAGGAAGGTATCCCTCCAGATCA 9818 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||||||| || ||||| || || |||| | |||| || || || Sbjct 9819 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 9878 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || || |||||||||||| ||||| | || || Sbjct 9879 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 9926 Score = 127 bits (140), Expect = 2e-24 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | ||||||||||| || || | ||||| ||| | || Sbjct 9472 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 9531 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | ||| || |||||||| ||||| || ||||| ||||| Sbjct 9532 GATACCATCGACAACGTTAAGTCGAAA-ATTCAAGACAAGGAAGGTATCCCTCCAGATCA 9590 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||||||||| || ||||| || || |||| |||| ||||| || Sbjct 9591 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAA 9650 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||| ||||| || || |||| |||| Sbjct 9651 CATTCAGAAGGAGTCCACCTTACATCTTG 9679 >seq1299 Length=15568 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | || || |||||||||| |||||||| || ||||| ||| | | Sbjct 7057 GATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTC 6998 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 6997 TGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCA 6938 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||||||||| || || || |||| ||| |||| |||| || || || Sbjct 6937 ACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 6878 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||| ||||||||||| || ||||||||||| ||| ||||| | || || || Sbjct 6877 CATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTGG 6827 >seq1389 Length=207 Score = 129 bits (142), Expect = 5e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAA 24796 ||||| || || || || ||| | ||||||| | || | || ||| ||||| ||| Sbjct 2 ACTATAACCCTAGAGGTTGAATCTTCCGACACTATTGACAACGTCAAAAGTAAGATTCAA 61 Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 || |||||||| || ||||| |||||||| | ||||| ||||| || || || || || Sbjct 62 GATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAGCAACTAGAA 121 Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 ||| |||| | |||| || || ||||| ||||||||||| || || |||||||||||| Sbjct 122 GATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCACTTGGTGTTG 181 Query 24917 CGATTGCGCGGAGG 24930 ||||| | || || Sbjct 182 AGATTGAGAGGTGG 195 >seq1390 Length=174 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || |||||||| ||||| || ||||| ||||||||| | ||||| |||||||| || Sbjct 174 AAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCCGGTAAG 115 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || ||||| || |||| |||| |||||||||||||| || || || || | || Sbjct 114 CAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAGTCTACGTTGCAT 55 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| ||||| | || || Sbjct 54 TTGGTGTTGAGATTGAGAGGTGG 32 >seq212 Length=9500 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || || || | ||||| ||| | | ||||| | || | || || | Sbjct 8989 ACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCA 9048 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| ||||| || || || || |||||| | ||||||||||| || || Sbjct 9049 AAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 9108 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| || |||| | |||| || || ||||||||||| ||||| || | ||| Sbjct 9109 CAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAATCCACTTTGCAC 9168 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| ||||| | || || Sbjct 9169 TTAGTCTTGAGATTGAGAGGTGG 9191 >seq1335 Length=21199 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24717 TTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAA 24776 |||| || | || ||||| || || || | ||||| ||| | | ||||| | || | Sbjct 17123 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 17182 Query 24777 CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCT 24836 || || |||||||||||||| ||||| || || || || |||||| | ||||||| Sbjct 17183 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 17242 Query 24837 TTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896 |||| || || || |||| || |||| | || || || ||||| |||||||||| Sbjct 17243 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAAT 17302 Query 24897 CGACACTACACTTGGTGTTGCGATT 24921 | || |||| ||||| ||| |||| Sbjct 17303 CCACTTTACATTTGGTCTTGAGATT 17327 >seq2088 Length=263 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24734 AAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACAAAAGAT 24792 || ||||| || || || || ||| | | ||||| | || |||| ||| | ||| || Sbjct 263 AAGACTATAACCCTAGAGGTTGAATCTTCTGACACTATTGACAACGTTAAGTCGAAA-AT 205 Query 24793 CCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || || || Sbjct 204 TCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAAGCAACT 145 Query 24853 GGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||| |||| |||| || || || ||||||||||| || || || ||| | || Sbjct 144 AGAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTCCACTCTTCACCTTGT 85 Query 24913 GTTGCGATTGCGCGGAGG 24930 ||| | ||| | || || Sbjct 84 CTTGAGGTTGAGGGGTGG 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449856603081200