Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178025.1_202017-04- 25] 7,290 sequences; 12,699,436 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2229 143 2e-29 seq1339 93.3 3e-14 >seq2229 Length=10782 Score = 143 bits (158), Expect = 2e-29 Identities = 449/690 (65%), Gaps = 34/690 (5%) Strand=Plus/Plus Query 19246 GGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT--GTCGCGTGTTT 19303 || || ||| |||||||||| || |||| || | ||||| |||| |||| | ||| Sbjct 5781 GGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGAGCGTTTGCAAGTCGAATCTTT 5840 Query 19304 TTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT-- 19360 || | ||| | || || || |||| | |||||| || |||||| | Sbjct 5841 CCTCCTTCAGTT---ATAGAAAAACTGGGTATTTCTCATGTTAAAGG---TTTGCTATTG 5894 Query 19361 -ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 | || || || ||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 5895 TACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 5954 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || |||||||| ||||| || | ||| || || ||| Sbjct 5955 GCTAAAGAGCC---CAAAATCGTCAATGGTCCAGAAATTTTGAGTAAGTACGTTGGTTCT 6011 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA-----AACGTT 19531 || |||||||| | || ||| ||| || || |||| |||| | | || | | Sbjct 6012 TCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGAATATAGGGCCAAGGGT 6071 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 ||| || ||| || || ||||| || | ||||| |||| | | | |||| Sbjct 6072 GAGG-----AATCTTCCTTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGC 6126 Query 19592 AAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 | |||||||| || || | ||| ||| |||| ||| || |||||| | | Sbjct 6127 AGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAG 6186 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 | ||| | || |||||| | ||| ||||||||||||| |||||||| ||||| ||| | Sbjct 6187 CTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATTGGTATGACCAATCGTA 6246 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 || ||||||||||| || | || || || ||| | || ||| | | | |||||| Sbjct 6247 AAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTC 6306 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGAC 19825 | |||||||||||| ||| | | ||||||| |||| || || | ||| | Sbjct 6307 ATTTACCCGATGAAAAAGGAAGACTCCAAATTTTCGACATTCAGACGAAGAAAATGAGGG 6366 Query 19826 AAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 ||||||| | | | |||||||| | ||| || | || || || ||||||| Sbjct 6367 AAAATAATATGATGAGCGACGATGTTAACTTAGCTGAGTTAGCTGCATTAACAAAAAACT 6426 Query 19886 ATAGCGGCGCAGAACTTGAGGGATTAGTGA 19915 || || || ||||||| ||||||| Sbjct 6427 TCTCTGGTGCTGAGATTGAGGGTTTAGTGA 6456 >seq1339 Length=16980 Score = 93.3 bits (102), Expect = 3e-14 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || ||||| |||||| ||| | || |||| ||||| | || || || |||||||| Sbjct 12476 CTTTCATGCTTATTGTACCAACGTTCTTGTGATATGGGGTTGGGAGTACCATTTAACATT 12535 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || |||||| || | || |||||||| | ||| | | | | || ||||| Sbjct 12536 GCATCATATGCTTTGTTGACTAGAATGATTGCTAAAGTTGTCGACATGGAGCCAGGTGAG 12595 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282 || |||| || || || |||| |||| |||| | | ||||| || | || | |||| Sbjct 12596 TTCATTCATACTTTGGGGGATGCACATGTTTATAAAGACCACATTGATGCCTTGAAAGAA 12655 Query 41283 CAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAAC 41342 ||| | | |||| || |||||||| || | ||| |||||| | | ||| || || Sbjct 12656 CAAATCTCCAGAAATCCAAGACCATTCCCGAAACTAAAGATTAAAAGGGACGTTAAAGAC 12715 Query 41343 ATTGATGATTT 41353 ||||||||||| Sbjct 12716 ATTGATGATTT 12726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397420687276450