Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178035.1_202017-04- 25] 8,158 sequences; 13,853,465 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq5880 850 0.0 seq6806 253 8e-63 >seq5880 Length=1542 Score = 850 bits (942), Expect = 0.0 Identities = 543/591 (92%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 17823 AGGAGAGATCATGGAAACGTTGCATGTCGAGCGCCGCGTCACGCGCAAGTTTGTGGGCAC 17882 |||||| | ||||| ||||||||||| | ||| || || |||||||||||||| ||||| Sbjct 215 AGGAGAAACAATGGATACGTTGCATGTTGCGCGTCGTGTTACGCGCAAGTTTGTCGGCAC 274 Query 17883 CTTCCGCCACCTGGACGCATGGGAAGGTCTGGGCACGATCCGGCACACGCCGTTCCGCAA 17942 ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| Sbjct 275 GTTCCGCCACCTGGACGCATGGGACGAGCTGGGCACGATCCGGCACACGCCATTCCGCAA 334 Query 17943 GGTGTACGACCCGGCCCACGACGAATGCGCGGACGTGTCGAGCGGCCCCAGCTACGTCGC 18002 ||||||| ||||||| | ||| ||| || ||||| |||||||||||||||||| Sbjct 335 GGTGTACAACCCGGCACGCGATGAA------GATTTGTCGGACGGCCCCAGCTACGTCGC 388 Query 18003 CTTCGCCCGCCTGCCCGCCGGCGCGGACGTCAAAGAGTGGTGCTTCGCCATCGAGGACAG 18062 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 389 CTTCGCCCGCCTGCCCGCCGGCGCGGACGTCAAAGAGTGGTGCCTCGCCATCGAGGACAG 448 Query 18063 TCTGTCGTCGCACGGCTGCGCGCACGAGTACGACTGCTGCGGCTGCGCGTCGCGCTACGC 18122 ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| Sbjct 449 CATGTCGTCGCACGGCTGCTCGCACGAGTACGACTGCTGCGGCTGCGCCTCGCACTACGC 508 Query 18123 CCGCGTGACGCCCTATCGCGGCCGCGTGGTGCGGATCAGCGTCGGCGTGTCCTACAACTA 18182 || ||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 509 GCGGGTGTATCCGTACCGCGGCCGCGTGGTGCGGATCAGCGTCGGCGTGTCCTACAACTA 568 Query 18183 CTGACCAACGCAACACGAAGGGGAACGACGATGGCACGAATCAAGGCTGACGAGGTTTGC 18242 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 CTGACCAACGCAACGCCAAGGGGAACGACGATGGCACGAATCAAGGCTGACGAGGTTTGC 628 Query 18243 GTGGGCGACAAGATCGTCCGCCCCGGCGATGCGATTTACGAAGTCGTGGCGCTCGAATGG 18302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 GTGGGCGACAAGATCGTCCGCCCCGGCGATGCGATTTACGAAGTCGTGGCGCTCGAATGG 688 Query 18303 TTCACGGTCACGGTACATCTGCATTGCGTCGAGCGCCGCGTGGCCAAGCTCGACCGACAC 18362 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 TTCACGGTCACGGTGCATCTGCATTGCGTCGAGCGCCGCGTGGCCAAGCTCGACCGACAC 748 Query 18363 GAGGCGTTTTCGTACAACCGCGACGAAAAGGTCGAGGTTGCCTGACAACCG 18413 ||| |||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 749 GAGACGTTCTCGTACAACCGCGACGAAAAGGTCGAGGTTGCCTAACAACCG 799 >seq6806 Length=206 Score = 253 bits (280), Expect = 8e-63 Identities = 179/205 (87%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 9110 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 9169 |||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||| Sbjct 2 CATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCG 61 Query 9170 CTACCTCCCGAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAA 9229 ||||| |||||||||||||| | | || |||||||||||||||||||| || ||||| Sbjct 62 TTACCTGCCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGACCGTTACAA 121 Query 9230 GGACAAGGCGAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGG 9289 ||||||||| |||||||| ||||||||| ||||||||||||| |||||||| |||||||| Sbjct 122 GGACAAGGCTAGCGGCGATTTCAAGGAAATGACCGAGTGGCATCGCGTCGCGTTCTTCGG 181 Query 9290 CCGCCTCGCCGAGATCGTCGACGAG 9314 ||||| || || |||||| |||| Sbjct 182 TCGCCTGGCGGAAATCGTCAGCGAG 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200543258878488