Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178035.1_202017-04- 25] 8,158 sequences; 13,853,465 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1353 86.0 7e-12 seq2721 84.2 2e-11 seq5623 82.4 8e-11 >seq1353 Length=56646 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || ||||| | ||||||||||||||||| | |||||||| Sbjct 53534 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 53593 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || ||| | | ||| | ||| | || | || || || || || || Sbjct 53594 GTTAGTTTACCCATAGTTGGGGCACGTAAGAACAAATTCAAAGAATGAGATTGATCAATA 53653 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || || || ||||| ||||||| |||| | |||||| | ||| ||||| | ||| Sbjct 53654 TAGACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAAACAGTC 53713 Query 78370 CGGTAAATGGCCTTCAGCTCTT 78391 ||| | | |||||| |||| Sbjct 53714 TTGTATAAGTCCTTCAATTCTT 53735 >seq2721 Length=252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 166346 ATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGCCTGGATTATC 166405 ||||||||| || || |||||||||||||| || ||| | || |||| | || ||| Sbjct 125 ATCGAGATCGCGCCGCTCGCGTACATGCGCGGCCGCACGCTGAACCACGCGTTCATCATC 184 Query 166406 GGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGACCCGGATCGG 166464 || ||| ||||||| ||||||| | |||||||||||| | || || |||||||| Sbjct 185 CTCGACGAGGCGCAGAACACGACGCCCGAGCAGATGAAGATGTTCCTCACGCGGATCGG 243 >seq5623 Length=517 Score = 82.4 bits (90), Expect = 8e-11 Identities = 206/304 (68%), Gaps = 13/304 (4%) Strand=Plus/Minus Query 79318 TCGGGCAGGCCCGGGCAC-TCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA-- 79374 ||| ||||| ||||||| ||| ||| | | ||| |||||| || ||||| || Sbjct 313 TCGTGCAGGTCCGGGCAGGTCGA-CGGCGAGAACAGCGTCCAGTCGGCG-CCTTC-CATC 257 Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATC 79434 || || |||||| ||||| || ||||| |||||| | |||| | ||| Sbjct 256 ACGCGCTTCATGAACAGGTCGGGAATCCAGTTCGCCGTGTTCATGTCGTGCGTACGGCGG 197 Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 ||||||||| |||| |||||||| || || ||| ||||||| |||||||| Sbjct 196 CGATCGTCGCCCGTGTTCTTGCGCAGCTCCAGGAACTCCTCGATGTCGAGGTGCCACGAT 137 Query 79495 TCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCC 79554 || || || | || || ||||||||||||| ||||||||||||| |||| Sbjct 136 TCGAGGTACGCGCAGACCGCGCCCTTGCGCTTGC---CGCCCTGGTTGACCGCGACGGCC 80 Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC--GCCGTTCGTCCCGT 79612 |||| ||||| || || | || || | ||| | ||||| ||||||||| || | Sbjct 79 GTGTCGTTGACGACCTTCAGGAACGGGACCACGCCTT--GCGACTTGCCGTTCGTGCCCT 22 Query 79613 TGAT 79616 |||| Sbjct 21 TGAT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548468864183520