Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178065.1_202017-04- 27] 1,144 sequences; 11,569,095 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq213 122 2e-22 seq548 107 5e-18 seq561 95.1 3e-14 >seq213 Length=66864 Score = 122 bits (134), Expect = 2e-22 Identities = 397/608 (65%), Gaps = 9/608 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| || ||||| || || || ||| | || || || | | || || || | Sbjct 8498 TATTTCGGATTCAAGACACTGGAGCGTTCGTACTTGCTAAGACTGAACGGTGAAGTGGCA 8439 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||||||||| || || | | ||||| ||| | ||||| ||||| ||||| || Sbjct 8438 GAACGTCCTCAGCATTTGGTAATGCGTGTGGCGCTAGGTATCCATGGTAGCGATATCGAA 8379 Query 110424 GCTGTTATTGAATG-TTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 |||| | |||| |||| || | || || || | | | | ||| ||| | || | Sbjct 8378 TCTGT-ACTGAAGACTTATAATTTGATGTCGTTAAGATACTTC-ACTCACGCTTCCCCAA 8321 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATT 110540 | |||| ||||| || || ||| || |||| || |||||| | | || Sbjct 8320 CTTTATTCAACGCTGGTACGCCACATCCTCAAATGTCTTCATG-TTTCTTAATTGCCATG 8262 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || ||||| ||||| ||||||||||||||| || | |||||| |||| | ||||| ||| Sbjct 8261 AAGGATGACTCTATCGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAA 8202 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | || || ||||| |||| | | | || || || | ||| | ||||||| Sbjct 8201 ACTGCAGGTGGTGTTGGTCTTCATATCAACAACATCCGTTCCACAGGTTCTTATATCGCT 8142 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || ||| |||||| || | |||| ||| | | || ||||| | ||||| Sbjct 8141 GGTACCAACGGTACTTCAAACGGGTTGATTCCTATGATTCGTGTTTTCAATAATACTGCC 8082 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 |||||| | || |||||| |||||| ||| | || || | | | || || Sbjct 8081 CGTTATGTGGACCAGGGTGGTAACAAGAGACCTGGTGCTTTCGCCCTTTTCTTGGAGCCA 8022 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 |||||| ||||||| || || || | || | | |||| || || |||||| Sbjct 8021 TGGCATGCAGATATCTTCGACTTTGTCGATATCAGAAAAACACATGGTAAGGAAGAAATT 7962 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 | ||| | ||||| || ||| | ||||| | ||| | |||||||||||||||||| Sbjct 7961 CGTGCAAGAGATTTGTTCCCTGCTCTATGGATCCCTGATCTTTTCATGAAACGTGTTCAA 7902 Query 110898 GAAAATGG 110905 || |||| Sbjct 7901 GAGGATGG 7894 >seq548 Length=17483 Score = 107 bits (118), Expect = 5e-18 Identities = 251/374 (67%), Gaps = 13/374 (3%) Strand=Plus/Minus Query 167614 TTGCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAAC 167673 |||| || | | || ||| | ||| || || | ||| ||||||| | ||| ||||| Sbjct 16241 TTGCTGCTAATGGCAAAGTATTAAATACGTCAACGAACATTTTCCATACTTT---CGAAC 16185 Query 167674 -CA--CGTCGTTTGCATTCATCGTAAAAACCATA-GTCTCTTGAGATATCAGCACATTCG 167729 || || | |||||||||||| || ||||| || ||| ||| || || |||| ||||| Sbjct 16184 TCAATCGCCTTTTGCATTCATCATAGAAACCGTACATCT-TTGTGACATTAGCAGATTCG 16126 Query 167730 TGATTTCCTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAAC 167789 ||||| || ||||| | || | ||| | | |||| || ||||| || Sbjct 16125 TGATTACCCCTTAACATAAAAAAGTTGTCTTTGTACTTTATTTTGTAACATAATAACAAT 16066 Query 167790 AAAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTA 167849 | |||||||| ||||| || ||| | || ||||||||||| || || | ||| ||| Sbjct 16065 AGTATTGTTTCCAATGAGTTCTTACCACGGTCCACATAATCACCCAAGAACAGATAATTA 16006 Query 167850 TTTTGGTTTGAAGGATTATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCA 167909 | | || || | | || ||||| ||||||||||| ||||||| ||| Sbjct 16005 GT---ATCAGATGGCACACCAGACAACTTCAAAATTCTCAATAAATCATTAAATTGTCCA 15949 Query 167910 TGTAAATCACCTACAACCTTTAT-GGGACTTGTAGTTTTAATTAGCATTGGTTCGCTCAT 167968 || | |||||| ||||| || || || |||||| | | || || | |||| ||| Sbjct 15948 TGAACATCACCGACAACTTTGATAGGCGCTTGTAATCTCAA-AAGAGTAGGTTGATTCAA 15890 Query 167969 AAATATTGTTCTTG 167982 ||| ||| ||||| Sbjct 15889 AAAAATTTCTCTTG 15876 >seq561 Length=41381 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 ||||||| |||| |||| || | ||||||||||| |||||||| || | || || Sbjct 1643 TTACAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGTCAACCA--CAAGCTC 1700 Query 304944 CTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTC 305003 ||||| || ||| | || | || |||| | || | || ||||||||||||| Sbjct 1701 TTCAAAAGTCCGGCCGTCCCGTTAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGTC 1760 Query 305004 GTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAAT 305058 |||| |||||||| ||||||| || ||||| |||||| ||||||| ||| || Sbjct 1761 GTATCAGAGGTAATTTAATGGGTAAGCGTGTGGATTTTTCGGCAAGAACTGTTAT 1815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186795404291384