Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178065.1_202017-04- 27] 1,144 sequences; 11,569,095 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq831 122 2e-22 seq355 102 2e-16 seq542 98.7 2e-15 >seq831 Length=57240 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || ||||||| ||| ||||||||| | || || ||| Sbjct 48754 ACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCC 48695 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || ||| |||||| | ||||| || || ||| Sbjct 48694 AAGATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 48635 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| || |||||| |||| |||||| |||| || || |||||||| ||| Sbjct 48634 CAATTGGAAGATGGTAGAACTTTGTCCGACTACAACATCCAAAAGGAATCTACTCTACAC 48575 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 48574 TTGGTCTTGAGA 48563 >seq355 Length=29176 Score = 102 bits (112), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || ||||| || || || || | || || ||| ||| ||||| | || Sbjct 12637 CAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCGACACTATTGACAA 12696 Query 206244 AGT--AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || |||| |||| ||||||| |||||||| || ||||| || ||| | || Sbjct 12697 CGTCAAAAGTAAAA--TTCAAGATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATT 12754 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || ||||| | |||||||| || || ||| | || |||||| |||| || || Sbjct 12755 TTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAA 12814 Query 206362 TCTACTCTTCACCTTGTTTTGAGA 206385 |||||||||||||| || |||||| Sbjct 12815 TCTACTCTTCACCTGGTGTTGAGA 12838 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || ||||| || || || || | || || ||| ||||||||| | Sbjct 12403 TTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCTGACACTAT 12462 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| || |||||||| || ||||| ||| || || |||||| | Sbjct 12463 TGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATT 12522 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| ||||| ||||| ||||||| || || || || | ||||| ||| | ||||| Sbjct 12523 GATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAA 12582 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || | || |||||| Sbjct 12583 AGAGTCTACGTTGCATTTGGTGTTGAGA 12610 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||| || || || || | || || ||| ||||||||| | || Sbjct 12865 CAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCTGACACTATTGACAA 12924 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || |||||||| || ||||| ||| || ||| |||||| | ||||| Sbjct 12925 CGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATCTT 12984 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || | |||||||| || || || | || ||||| | || || ||||| Sbjct 12985 TGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTC 13044 Query 206364 TACTCTTCACCTTGTTTTGAG 206384 ||||||||||| || ||||| Sbjct 13045 CACTCTTCACCTCGTCTTGAG 13065 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| |||||||| || || ||| || ||| Sbjct 12170 CAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCCGAC 12229 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || || || || || ||||| || || || || Sbjct 12230 ACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAACAG 12289 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||| |||||| | ||||| || || || ||| | || |||||| || Sbjct 12290 AGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAACATC 12349 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || || |||||||||||| | || |||||| Sbjct 12350 CAAAAGGAATCTACTCTTCACTTGGTGTTGAGA 12382 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| || | |||||||||||| || || |||| || ||||||| ||| || || || Sbjct 12382 TCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACC 12323 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| |||||||| ||||| ||||| | || |||||| Sbjct 12322 GTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGA 12283 >seq542 Length=78881 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||||||||||| ||| ||||||||| | || || ||| Sbjct 38681 ACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCC 38622 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || ||| |||||| | ||||| || || ||| Sbjct 38621 AAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 38562 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || ||| | | || |||||| |||| || || || ||| | || Sbjct 38561 CAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAATCCACTTTACAT 38502 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 38501 TTGGTCTTGAGA 38490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181803477461624