Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178075.1_202017-04-
25] 6,246 sequences; 12,545,896 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq45 140 2e-28
seq1257 125 5e-24
seq533 105 4e-18
seq1059 104 2e-17
seq148 98.7 7e-16
>seq45
Length=2730
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 282 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 341
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 342 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 376
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 2270 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 2329
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 2330 GCCAATATTTAGCTTTA 2346
>seq1257
Length=777
Score = 125 bits (138), Expect = 5e-24
Identities = 168/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| | | | ||| | ||| | ||| |||||| ||||| ||||||||||
Sbjct 568 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 509
Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
||| |||| |||| |||| || || |||||||| || | | |||||||||
Sbjct 508 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 453
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| |||| ||||| ||||| |||||| ||| || || | || ||||| | |
Sbjct 452 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 393
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||| ||||| || |||||||| ||||| || || ||||| ||||||||
Sbjct 392 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 340
>seq533
Length=22649
Score = 105 bits (116), Expect = 4e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || ||
Sbjct 8678 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8619
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| | | || || ||||| || || ||||| || | | |||||| || | ||
Sbjct 8618 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8559
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| || || ||| ||||| | | ||| || | ||||||
Sbjct 8558 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8499
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| | |||||||| ||||| || || || || ||||| || ||||| ||
Sbjct 8498 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8448
>seq1059
Length=424
Score = 104 bits (114), Expect = 2e-17
Identities = 150/211 (71%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | |||||||||||| | || ||| || ||||| || |||||||
Sbjct 210 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 269
Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
||| |||| |||| || | ||| || |||||||| || | | |||||||||
Sbjct 270 ACA----GCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCT 325
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| || | ||||| ||||| |||||| ||| || || | || ||| || | |
Sbjct 326 GGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGAT 385
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCA 38295
||||| |||| || ||||| ||||| ||||
Sbjct 386 TCAACCTCTAGGGTTATAGTCTTACCTGTCA 416
>seq148
Length=12247
Score = 98.7 bits (108), Expect = 7e-16
Identities = 153/217 (71%), Gaps = 9/217 (4%)
Strand=Plus/Plus
Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142
|||| |||||||| ||||| | ||| || | ||||||||| |||||||||||||||||
Sbjct 12027 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 12086
Query 38143 AATCAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGT 38198
| || |||| |||| | || |||| ||| || |||||||| || | | |||
Sbjct 12087 AGTCCGACA----GCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGC 12142
Query 38199 TGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258
|| || | || | ||||| ||||| |||||| ||| || || | | ||| ||
Sbjct 12143 TGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCA 12202
Query 38259 CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCA 38295
| |||||| |||| || ||||| ||||| ||||
Sbjct 12203 GAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCA 12239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334921702772426
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |