Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178135.1_202017-04- 21] 1,876 sequences; 11,783,915 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq37 114 3e-20 seq6 104 6e-17 seq429 95.1 3e-14 >seq37 Length=58421 Score = 114 bits (126), Expect = 3e-20 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | |||||||||| || || || || || Sbjct 26936 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAA 26995 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | |||||| ||||| ||| ||||| || || || ||||||| || || Sbjct 26996 GATCAATCTTTGTTGA---TCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAAC 27052 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | |||| ||||| ||||| | || || || || ||||||| |||||| Sbjct 27053 GTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTT 27112 Query 288459 GACGAATATCTGCATTAT 288476 |||||| |||||||| || Sbjct 27113 GACGAAAATCTGCATAAT 27130 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||| ||| || || || || Sbjct 25112 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAA 25171 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||||| ||||| ||||||||||| || ||||| ||| ||||| Sbjct 25172 AATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTT 25231 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| ||||| || || || || || ||||| || ||||| |||||||| Sbjct 25232 GTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGAC 25291 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 25292 GAAAATTTGCAT 25303 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||| ||| || || || || Sbjct 25796 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAA 25855 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||||| ||||| ||||||||||| || ||||| ||| ||||| Sbjct 25856 AATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTT 25915 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| ||||| || || || || || ||||| || ||||| |||||||| Sbjct 25916 GTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGAC 25975 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 25976 GAAAATTTGCAT 25987 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || ||||| || | ||||| | |||||||| | ||| || || || || Sbjct 25341 TCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAA 25400 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | |||||| ||||| ||| ||||| || ||||||||||||| || ||| Sbjct 25401 ATCAATCTTTGTTGA---TCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACG 25457 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||||| || || | ||||| || || ||||||| |||||| Sbjct 25458 TTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTA 25517 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 25518 ACAAAGATCTGCAT 25531 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || ||||| || | ||||| | |||||||| | ||| || || || || Sbjct 26025 TCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAA 26084 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | |||||| ||||| ||| ||||| || ||||||||||||| || ||| Sbjct 26085 ATCAATCTTTGTTGA---TCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACG 26141 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||||| || || | ||||| || || ||||||| |||||| Sbjct 26142 TTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTA 26201 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 26202 ACAAAGATCTGCAT 26215 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || ||||| || | ||||| | |||||||| | ||| || || || || Sbjct 26481 TCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAA 26540 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | |||||| ||||| ||| ||||| || ||||||||||||| || ||| Sbjct 26541 ATCAATCTTTGTTGA---TCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACG 26597 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||||| || || | ||||| || || ||||||| |||||| Sbjct 26598 TTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTA 26657 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 26658 ACAAAGATCTGCAT 26671 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || || || || ||||| | ||| || || || || || || || | Sbjct 26217 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 26276 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 ||||| | |||||||||| || || || || ||||||| | |||||| ||||| Sbjct 26277 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGA---TCTGGA 26333 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || || ||||||| || ||||| || |||| || ||||| Sbjct 26334 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCA 26393 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 26394 ACTTCCAATGTTATGGTTTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 26443 >seq6 Length=231763 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | || ||||| ||||| || || || || Sbjct 8740 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAA 8681 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| | ||| || ||||| || || ||||| || | || || || Sbjct 8680 GATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 8621 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| || || || ||||| ||||| | ||||||||| Sbjct 8620 GTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 8561 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 8560 GAAAATTTGCAT 8549 >seq429 Length=245 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || ||||| || | ||||| | |||||||| | ||| || || || || Sbjct 70 TCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAA 129 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | |||||| ||||| ||| ||||| || ||||||||||||| || ||| Sbjct 130 ATCAATCTTTGTTGA---TCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACG 186 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||| ||||| || || | ||||| || || ||||||| |||||| Sbjct 187 TTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179626045531928