Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178135.1_202017-04- 21] 1,876 sequences; 11,783,915 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq561 113 5e-20 seq37 84.2 2e-11 >seq561 Length=46774 Score = 113 bits (124), Expect = 5e-20 Identities = 522/816 (64%), Gaps = 23/816 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTT- 132683 || || || || ||||| || || ||||||| ||| ||| ||||| |||||||| Sbjct 39379 TTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTT 39320 Query 132684 --GGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||| ||| | |||| | |||| || | || | ||| |||||||| |||||| Sbjct 39319 TCGACCTTGTAGTATTTCTTGTTACCGAA-AG--CAACCAACAGTCTGTCGGCGACGAAC 39263 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 || | |||||| ||| || || | || |||| | || || | || || Sbjct 39262 TCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC 39203 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCG 132861 || | | ||| || || | || || |||||||| |||| |||| || | | Sbjct 39202 AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAATTTTTTCAACGATGGCTGGG 39143 Query 132862 -CTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 || | ||| | |||||| ||||| |||||| ||||||||| ||||| || || Sbjct 39142 TCTGGTTTGTT-CTTCAAATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTC 39084 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| || | || | ||||||| || || || |||||||| | || | ||||| | Sbjct 39083 GTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAA 39024 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||| || || || || ||||| || || | || || || || || Sbjct 39023 CCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAAC 38964 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 || | || || ||| ||| || | || | ||||| | | ||||||||||||| Sbjct 38963 TAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGA-ATCCATCTTAAAGCCCATTCGGCCT 38905 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTT---TCTCTTCCG 133156 | || || || || || | ||||| || ||||| || || | |||| | Sbjct 38904 TCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAA---GAATTCACTTTCTTTAG 38848 Query 133157 AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | ||| || ||||| | || || |||| ||||| | || || || Sbjct 38847 GGTCCTTGATGTAAGTATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCA 38788 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 |||||| || ||||| || | | ||||| | || ||||| | ||| | Sbjct 38787 TGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTT 38728 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG- 133335 | |||| ||||| || || || ||||| |||||||||||||| || || || | Sbjct 38727 CAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAAC--TCTGGA 38670 Query 133336 -ATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAG 133391 |||||| | |||||| ||||||| | | |||||| | | ||||| |||| Sbjct 38669 AATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGTCATGGATATCCTTAGACAA 38610 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 || | || || ||||||| || || || ||||| Sbjct 38609 ATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGC 38574 >seq37 Length=58421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || || ||| | || || || | || Sbjct 25987 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCC 25928 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| |||| || || ||||| || || || | || || Sbjct 25927 GACACTATTGACAACGTCAAAAGTAAAATTCAA-GATAAAGAAGGTATCCCTCCGGATCA 25869 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | |||| || || || || || || || | | ||| | |||||||| Sbjct 25868 ACAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAA 25809 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || || |||||| || | |||||||| || Sbjct 25808 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 25761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161070947840