Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178135.1_202017-04- 21] 1,876 sequences; 11,783,915 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 199 8e-46 seq37 194 3e-44 seq34 176 9e-39 seq6 168 1e-36 seq429 161 2e-34 >seq10 Length=200488 Score = 199 bits (220), Expect = 8e-46 Identities = 176/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || |||||||||| ||| |||||||| || || || || |||| Sbjct 168311 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 168370 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 168371 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 168430 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||||| || ||||| ||||| || ||| || ||| | Sbjct 168431 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 168490 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| ||||| Sbjct 168491 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 168530 >seq37 Length=58421 Score = 194 bits (214), Expect = 3e-44 Identities = 182/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 26899 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 26958 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||||||||||||||| || || || |||||||| | ||||||||||||||||| Sbjct 26959 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAG 27018 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || | || || || || || ||||| || ||| | Sbjct 27019 GGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAA 27078 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||||| ||||| || || || ||||| ||||| || || |||||||| || Sbjct 27079 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAAT 27130 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 25303 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 25362 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || ||||| || | ||||||||||||||||| Sbjct 25363 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAG 25422 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | || || || || ||||| || | ||| | Sbjct 25423 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 25482 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 25483 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 25531 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 25987 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 26046 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || ||||| || | ||||||||||||||||| Sbjct 26047 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAG 26106 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | || || || || ||||| || | ||| | Sbjct 26107 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 26166 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 26167 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 26215 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 26443 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 26502 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || ||||| || | ||||||||||||||||| Sbjct 26503 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAG 26562 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | || || || || ||||| || | ||| | Sbjct 26563 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 26622 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 26623 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 26671 Score = 174 bits (192), Expect = 3e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 25759 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 25818 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||| ||||||||||| || |||||||| || | ||| |||||||| |||| Sbjct 25819 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 25878 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || ||||| ||||||||||| ||| ||||| || || ||||| || || || ||| Sbjct 25879 GGATACCTTCTTTATCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 25937 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 25938 ACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 25987 Score = 168 bits (186), Expect = 1e-36 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 25075 TACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 25134 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||| ||||||||||| || |||||||| || | ||| |||||||| |||| Sbjct 25135 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 25194 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || ||||| ||||||||||| ||| ||||| || || ||||| || || || ||| Sbjct 25195 GGATACCTTCTTTATCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 25253 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 25254 ACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 25303 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||||||||||||||| || || || Sbjct 26247 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTGCTTACCG 26306 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 26307 GCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTA 26366 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || || ||| || ||| |||||||| ||||| || || ||||||| ||| Sbjct 26367 ACGTTGTCGATAGTGTCAGAAGATTCAACTTCCAATGTTATGGTTTTACCTGTCAGTGTC 26426 Query 82794 TTTACAAATATCTGCAT 82810 || || || || ||||| Sbjct 26427 TTGACGAAAATTTGCAT 26443 Score = 163 bits (180), Expect = 6e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| |||| || ||||| | || || | ||| ||||| || || || || ||||| | Sbjct 24841 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 24900 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || || || ||||||| ||||||||||| || || ||||| || | |||||| || | Sbjct 24901 AGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGT 24960 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 ||||||| || |||||||| |||||||| || | || || || ||||| || ||| || Sbjct 24961 CTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAG 25020 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 25021 ATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 25075 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||||||||||||||| || || || Sbjct 25563 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTGCTTACCG 25622 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 25623 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 25682 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || || ||| || ||| || || | ||||| ||||| ||||||| ||| Sbjct 25683 ACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 25742 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| || ||||| Sbjct 25743 TTGACAAAAATTTGCAT 25759 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||||||||||||||| || || || Sbjct 26703 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTGCTTACCG 26762 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 26763 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 26822 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || || ||| || ||| || || | ||||| ||||| ||||||| ||| Sbjct 26823 ACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 26882 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| || ||||| Sbjct 26883 TTGACAAAAATTTGCAT 26899 >seq34 Length=66688 Score = 176 bits (194), Expect = 9e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || | ||| ||||| || || || || || |||| Sbjct 3587 TACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 3528 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 3527 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 3468 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| | Sbjct 3467 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAA 3408 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| || || Sbjct 3407 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 3368 >seq6 Length=231763 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| ||||||||||| || || || || || || || Sbjct 8776 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8717 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | ||| || ||||||||||| | ||||||||| || || || Sbjct 8716 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8657 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| || Sbjct 8656 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8597 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || || ||||| || || || ||||| Sbjct 8596 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 8549 >seq429 Length=245 Score = 161 bits (178), Expect = 2e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 32 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 91 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || ||||| || | ||||||||||||||||| Sbjct 92 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAG 151 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | || || || || ||||| || | ||| | Sbjct 152 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 211 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 | || ||||| || || || || ||||| ||||| Sbjct 212 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981803600555964