Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178155.1_202017-04- 21] 1,296 sequences; 11,857,839 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq55 131 1e-25 seq21 102 7e-17 seq583 95.1 1e-14 seq46 95.1 1e-14 seq652 91.5 1e-13 seq916 89.7 4e-13 >seq55 Length=23887 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || || || || ||||| ||||| || |||||| ||| ||| || Sbjct 14131 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 14072 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | | || ||||| || ||| ||||| || || | || || Sbjct 14071 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 14012 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||| | |||||||| || || |||||||||||| || |||| || |||| || Sbjct 14011 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 13952 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||| ||||||||||| ||| |||| || ||||| |||| || Sbjct 13951 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 13902 >seq21 Length=121191 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622 ||||| || || || || ||||| ||||| || ||| ||| |||| || || | Sbjct 120053 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 119994 Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682 | | || ||||| ||| || ||||| || || | || || ||||| ||| | Sbjct 119993 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 119934 Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| || || ||||||||||| || ||| || | || || |||||||||||| Sbjct 119933 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 119874 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||| ||| ||||| | || || ||||| |||| || || || Sbjct 119873 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTATCAT 119830 >seq583 Length=290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || || || || ||| || ||| |||| Sbjct 290 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 231 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | |||| ||||| ||||| || || | || ||||||| Sbjct 230 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 171 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || || ||| ||||||| || ||| || | ||||||||| Sbjct 170 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 111 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| ||||| |||| |||| || ||||| |||| || || Sbjct 110 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTAT 61 >seq46 Length=32793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || ||||||||||| || || ||| | || Sbjct 32504 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 32563 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||| |||||| ||||| || || | || ||||||| Sbjct 32564 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 32623 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || || | ||||| || ||| || | || || ||| Sbjct 32624 CAGAGGTTGATCTTTGCTGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 32683 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||||||||| ||| |||| || ||||| |||| || || Sbjct 32684 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTAT 32733 >seq652 Length=44880 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || || || || ||| || ||| |||| Sbjct 1 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 60 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | |||| || || || ||||| || | || |||||| Sbjct 61 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 120 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| || || ||| | |||||| || ||| || | || || ||| Sbjct 121 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 180 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||||||||| ||| |||| || ||||| |||| || || Sbjct 181 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTAT 230 >seq916 Length=64107 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622 || || || || || || ||||| ||||| || ||| ||| |||| || || | Sbjct 37449 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 37390 Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682 | | || ||||| || ||| ||||| || || | || || ||||| ||| | Sbjct 37389 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 37330 Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| || || ||||||||||| || |||| | | || || ||||| ||||| Sbjct 37329 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 37270 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||| ||| | || |||| || |||||| |||| || || || Sbjct 37269 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTATCAT 37226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425398080731184