Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178165.1_202017-04- 21] 1,545 sequences; 11,875,116 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq11 105 5e-18 seq1388 100 2e-16 seq683 91.5 1e-13 seq650 84.2 2e-11 >seq11 Length=177817 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| ||||| || || ||||| || || || ||| Sbjct 8841 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8782 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 8781 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8722 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| || || ||||| | ||| ||| || | | || || Sbjct 8721 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8662 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||||||||||||||| || || |||||||| Sbjct 8661 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 8614 >seq1388 Length=48357 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| ||||||||||| | ||| |||||| ||||| |||||||| Sbjct 15760 ACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGA 15819 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| ||| || || ||||| ||||| | ||| || || |||| Sbjct 15820 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGG 15879 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| |||||| |||||| | ||| ||| || | | || || Sbjct 15880 AATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 15939 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| ||| || || || |||||||| Sbjct 15940 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 15987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| ||||||||||| | ||| |||||| ||||| |||||||| Sbjct 15988 ACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGA 16047 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| ||| || || ||||| ||||| | ||| || || |||| Sbjct 16048 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGG 16107 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| |||||| || || | ||| ||| || | | || || Sbjct 16108 AATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAAC 16167 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| ||| || || || |||||||| Sbjct 16168 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 16215 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| |||||||| || || || || ||||| || || || || Sbjct 15532 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 15591 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| || | ||| || || ||||| ||||| | || || ||| |||| Sbjct 15592 CAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGG 15651 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||| || |||||| | ||| ||| || | | || || Sbjct 15652 GATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 15711 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| ||| || || || |||||||| Sbjct 15712 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 15759 >seq683 Length=305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| ||||||||||| | ||| |||||| ||||| |||||||| Sbjct 57 ACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGA 116 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| ||| || || ||||| ||||| | ||| || || |||| Sbjct 117 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGG 176 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| |||||| || || | ||| ||| || | | || || Sbjct 177 AATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAAC 236 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||| ||| || || || |||||||| Sbjct 237 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 284 >seq650 Length=9723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || || | ||| ||||||||||| || || || Sbjct 6675 ACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 6734 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 6735 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 6794 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| ||| ||||| | ||| ||| || | | || || Sbjct 6795 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 6854 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAA 44112 || | || || || ||||| || |||||||| ||||| Sbjct 6855 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 6893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770919648660