Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178165.1_202017-04- 21] 1,545 sequences; 11,875,116 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1388 170 2e-37 seq11 150 2e-31 seq683 138 1e-27 seq650 109 5e-19 seq1418 104 2e-17 >seq1388 Length=48357 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | ||||||||||| || || | || || ||| || || Sbjct 16443 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 16384 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 16383 GACACGATCGATAACGTTAAGTCGAAA-ATCCAGGACAAGGAAGGTATCCCTCCAGATCA 16325 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||||||| || ||||| || || |||| | |||| || || || Sbjct 16324 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 16265 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || || |||||||||||| ||||| | || || Sbjct 16264 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 16217 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| || || ||||| || || || || ||| | || Sbjct 15759 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 15700 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 15699 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 15640 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || || || || || ||| |||| | |||| || || ||| Sbjct 15639 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 15580 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || || |||||||||||| ||||| | || || Sbjct 15579 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 15533 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| || || ||||| || || || || ||| | || Sbjct 15987 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 15928 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| ||| || |||||||| ||||| || ||||| ||||| Sbjct 15927 GACACTATTGACAACGTCAAAAGTAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGATCA 15869 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| |||||||| || || ||||| || |||| |||| |||||||| Sbjct 15868 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAA 15809 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || | || ||||||||| ||||| | || || Sbjct 15808 CATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 15761 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| || || ||||| || || || || ||| | | Sbjct 16215 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCT 16156 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| || |||||||| ||||| || ||||| ||||| Sbjct 16155 GACACTATTGACAACGTTAAGTCGAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGATCA 16097 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| |||||||| || || ||||| || |||| |||| |||||||| Sbjct 16096 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAA 16037 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || | || ||||||||| ||||| | || || Sbjct 16036 CATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 15989 Score = 127 bits (140), Expect = 2e-24 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | ||||||||||| || || | ||||| ||| | || Sbjct 16671 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 16612 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | ||| || |||||||| ||||| || ||||| ||||| Sbjct 16611 GATACCATCGACAACGTTAAGTCGAAA-ATTCAAGACAAGGAAGGTATCCCTCCAGATCA 16553 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||||||||| || ||||| || || |||| |||| ||||| || Sbjct 16552 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAA 16493 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||| ||||| || || |||| |||| Sbjct 16492 CATTCAGAAGGAGTCCACCTTACATCTTG 16464 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || ||||| ||||| || || || || ||| | | Sbjct 15531 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 15472 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| || |||||||| ||||| || ||||| || || Sbjct 15471 GACACTATTGACAACGTTAAGTCGAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 15413 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||| |||||||| || || || || ||| |||| |||| || || || Sbjct 15412 GCAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 15353 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || ||| | || ||| | ||| | || || Sbjct 15352 TATTCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGG 15305 >seq11 Length=177817 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | || || |||||||||| |||||||| || ||||| ||| | | Sbjct 8613 GATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTC 8672 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 8673 TGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCA 8732 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||||||||| || || || |||| ||| |||| |||| || || || Sbjct 8733 ACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 8792 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||| ||||||||||| || ||||||||||| ||| ||||| | || || || Sbjct 8793 CATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTGG 8843 >seq683 Length=305 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| || || ||||| || || || || ||| | | Sbjct 284 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCT 225 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| || |||||||| ||||| || ||||| ||||| Sbjct 224 GACACTATTGACAACGTTAAGTCGAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGATCA 166 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| |||||||| || || ||||| || |||| |||| |||||||| Sbjct 165 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAA 106 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || | || ||||||||| ||||| | || || Sbjct 105 CATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 58 >seq650 Length=9723 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || || || | ||||| ||| | | ||||| | || | || || | Sbjct 6878 ACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCA 6819 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| ||||| || || || || |||||| | ||||||||||| || || Sbjct 6818 AAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAG 6759 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| || |||| | |||| || || ||||||||||| ||||| || | ||| Sbjct 6758 CAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAATCCACTTTGCAC 6699 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| ||||| | || || Sbjct 6698 TTAGTCTTGAGATTGAGAGGTGG 6676 >seq1418 Length=52496 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24717 TTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAA 24776 |||| || | || ||||| || || || | ||||| ||| | | ||||| | || | Sbjct 15054 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGATA 15113 Query 24777 CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCT 24836 || || |||||||||||||| ||||| || || || || |||||| | ||||||| Sbjct 15114 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 15173 Query 24837 TTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896 |||| || || || |||| || |||| | || || || ||||| |||||||||| Sbjct 15174 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAAT 15233 Query 24897 CGACACTACACTTGGTGTTGCGATT 24921 | || |||| ||||| ||| |||| Sbjct 15234 CCACTTTACATTTGGTCTTGAGATT 15258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888911352600