Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178175.1_202017-04- 21] 1,892 sequences; 11,970,001 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq51 109 6e-19 seq30 86.0 7e-12 seq519 84.2 2e-11 >seq51 Length=49323 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||||||||||||||| || ||| || ||||| || ||||||| Sbjct 17401 ACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGA 17460 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || | |||| || || |||||||| || || || | || || || || | || Sbjct 17461 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 17520 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| |||| | | | || | | | ||||||| ||||| | Sbjct 17521 AATACCTTCCTTGT-CTTGAATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 17579 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 17580 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 17628 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||||||||| || | || |||||||| || ||||| |||| Sbjct 17047 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 17106 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| |||||||||||||| || || || | | ||| || || | || Sbjct 17107 CAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGG 17166 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| |||||| || | | | | ||||||| ||||| || Sbjct 17167 GATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 17226 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 17227 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 17274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||||||||||||||| || ||| || ||||| || ||||||| Sbjct 16819 ACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGA 16878 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || | |||| || || |||||||| || || || | || || || || | || Sbjct 16879 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 16938 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| |||| | | | ||| | | | ||||| ||||| | Sbjct 16939 AATACCTTCCTTGT-CTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAA 16997 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || || || || || || ||||| ||||| |||||||| Sbjct 16998 CCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 17046 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| | | ||| | ||| || ||| |||||| ||||| |||||||||| Sbjct 17629 ACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGA 17688 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || | |||| |||||||||||||| || || || | || || || || | || Sbjct 17689 CAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 17748 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| |||| | | | ||| | | | || ||| ||||| | Sbjct 17749 GATACCTTCCTTGT-CTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAA 17807 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || |||||||| || || | ||||| || || || ||||| Sbjct 17808 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 17856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || | ||| || | || | ||| |||||||||||||||||| || | Sbjct 16135 ACCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGA 16194 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || | | || ||||| || ||||| || || || | || |||||||| | || Sbjct 16195 CAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAGATCAATCTTTGCTGGTCTGGAGG 16254 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| |||||| | | ||| | | | |||||| ||||| | Sbjct 16255 AATACCTTCCTTGT-CTTGAATTTTTGACTTAACGTTGTCAATAGTGTCGGAAGATTCAA 16313 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || || || || ||||| || || || || |||||||| Sbjct 16314 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 16362 >seq30 Length=77243 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | ||| |||||||| || ||| |||||||| || ||||| |||| Sbjct 14700 ACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGA 14641 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || | ||||||||||| || || | || || ||||| | ||| Sbjct 14640 TAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 14581 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || |||| | | | ||||| ||||| || Sbjct 14580 GATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAAC 14521 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 || | |||||||| || || || | ||||| || ||| Sbjct 14520 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 14481 >seq519 Length=145521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| || || ||||| ||| || |||||||| ||||| |||| Sbjct 17818 ACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 17759 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || | |||||||||||| || || | || || ||||| | ||| Sbjct 17758 CAAGGTTCTACCGTCTTCCAACTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 17699 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| | |||| |||| | | | ||||| ||||| | Sbjct 17698 GATACCTTCCTTGT-CTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 17640 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 42199 | || | |||||||| || || || | ||||| ||||| Sbjct 17639 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 17600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199953017280