Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178175.1_202017-04- 21] 1,892 sequences; 11,970,001 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 178 4e-39 seq57 147 6e-30 seq3 131 5e-25 seq18 102 2e-16 seq24 84.2 6e-11 >seq4 Length=223549 Score = 178 bits (196), Expect = 4e-39 Identities = 481/732 (66%), Gaps = 12/732 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| |||||||| | ||| || ||||||| ||||| || || || || Sbjct 169993 GTATTCAACAATTTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTTTGATT 169934 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 |||||| |||||||||||||||||||| | || | | || || || || || | || || Sbjct 169933 AGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTACCAGTTTCAGTTTGAGC 169874 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG--CCTTCC 155807 |||| ||| ||| | | |||| |||| | || || | ||||| Sbjct 169873 TTCCAAAATGGAATACCATAATTTTTGGGC-----TTTGATAGTCTTACCACGACCTTCT 169819 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG- 155866 ||| || |||| || | | || |||||||||||||| || | ||||| Sbjct 169818 TTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAATCGCTTAAACCAGGA 169759 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | | || | | || | | ||| | ||| | ||||||| ||| || | Sbjct 169758 GCTGATGTTGGAG-AGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAG 169700 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| ||| | |||| ||| | || ||||| ||||| | ||||| || Sbjct 169699 ATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTT 169640 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||||| | || | || || ||||||| ||| ||| ||||| || | ||||| Sbjct 169639 CTTCCTAATATCAATAAAATCAAAGATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAA 169580 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| || || |||||||| || ||||| || || || |||||||| |||| Sbjct 169579 CGCACCAGGTCTTTTATTACCACCCTGGTCAACATAACGGGCGGTGTTATTGAAAACACG 169520 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 | ||||||||| | ||| || ||||| || || || || ||| | ||||||| ||| Sbjct 169519 AATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGA 169460 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 |||| ||||| |||||||| ||||||||||| | ||| ||||| ||| ||||| Sbjct 169459 ACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTC 169400 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 ||| | || | | |||| || || ||||| || || | ||| | | | | || || Sbjct 169399 CTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGA 169340 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | ||||||| ||| || || || ||||| | || || | || ||| ||||||| Sbjct 169339 GGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATA 169280 Query 156344 CTTATTAGACAT 156355 || |||||| Sbjct 169279 TTTTAGAGACAT 169268 >seq57 Length=43660 Score = 147 bits (162), Expect = 6e-30 Identities = 240/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCC 156068 ||||| | ||| |||||||| | | || ||| |||| |||||| |||||| Sbjct 6543 ATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTGTTACCACCC 6484 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || ||||| || ||||| |||||||| |||| | ||||||||| | || || ||| Sbjct 6483 TGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAA 6424 Query 156129 GTGCCATTGGTTCC-GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCC 156187 || || ||||| || |||| ||| ||||| | || || | || | ||||| || || Sbjct 6423 GTACCGTTGGTACCAGCGA-TATAAGAACCTGTGGAACGGATGTTGTTGATATGAAGACC 6365 Query 156188 AATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTC 156247 || |||||||| ||| ||||| ||| ||||| || | ||||| |||||||||| Sbjct 6364 AACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTC 6305 Query 156248 AATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCC 156307 ||||| ||||| | ||| | | || | || ||| | |||||| |||| || || Sbjct 6304 GATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGATGTGGCGTACC 6245 Query 156308 AGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA-CTTA 156347 ||||||||||| || || | || ||| | || || |||| Sbjct 6244 AGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTA 6204 >seq3 Length=227482 Score = 131 bits (144), Expect = 5e-25 Identities = 256/378 (68%), Gaps = 3/378 (1%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||| ||||| ||||||| | ||||||| || | ||||||| ||| || || | Sbjct 34443 CCTGTCAAATCTACCAGGCCTTAATAATGCTTTATCGAGAATATCGGGTCTATTGGTACC 34384 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || || ||||||| || | | | | || |||||||| | ||| |||||||| Sbjct 34383 AGCTAAAACAACAACGTGGTCAGCTGGAGTGAAACCATCCATTTCTACTAACATTTGATT 34324 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || || | || || |||||||| | |||| ||| |||| | || |||| Sbjct 34323 TAGCGTGTTCTCTCTCTCATCATTGGCACCTGAAAAATTACCCTTTTGTCTTGCTTTT-- 34266 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | |||||||||||||||||| || | | | || | ||||| ||| ||| || Sbjct 34265 -CCTATAGCATCAATTTCGTCAATAAACACAATTGAGGGTGCATTTTCTCTTGCAGTTTT 34207 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || |||||||| | | ||| |||| ||||||| |||||||||||||||| ||| | Sbjct 34206 GAACAAATCTCTTACTCTTGCTGCACCAACACCAACAAACATTTCTACAAATTCTGAACC 34147 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || || | || | ||| ||||| |||||| |||| | || || | || || Sbjct 34146 AGAAACAAAATAAAACGGAACACCGGCTTCACCTGCTGTTGCCTTTGCAAGCAAAGTTTT 34087 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| || || ||||| || Sbjct 34086 ACCGGTACCTGGTGGACC 34069 >seq18 Length=93752 Score = 102 bits (112), Expect = 2e-16 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| |||| ||| || ||| || ||||| | | || | ||||||||| Sbjct 19708 TTTCTTGTGGTGTTATCGTAATGAACCATGATATCTTCTAGAGCTTTCACTAAACGACGT 19649 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| | |||||| || || ||||| || ||||| ||||||||||| Sbjct 19648 TGAATATAACCTGTTTCGGCTGTTTTGACGGCGGTATCGATAAGACCTTCACGACCACCC 19589 Query 302659 ATAGCATGGAAGAATAGCTCT--TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGA 302716 || |||||||| || | ||| | |||| | || | ||| | | ||| ||||||| | Sbjct 19588 ATTGCATGGAAAAAAAATTCTTGTGGGGTC-AAACCTCTCAA-ATATGAGTTCTCAACAA 19531 Query 302717 AACC 302720 |||| Sbjct 19530 AACC 19527 >seq24 Length=87071 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| | |||||||||| ||||||||||| || || || || | || || | Sbjct 56884 TGGGCAACAGTCATACGAGATGGAATAGCATGAGGGTTAATAATCAAATCTGGAACAATA 56825 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || || || || |||||||| || || | ||| || | |||||||| |||||||| Sbjct 56824 CCTTCTGCGGTAAATGGCATATC-TTCTCTACGATATGTGATACCAATAGTACCCTTTTG 56766 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| || || |||||||| Sbjct 56765 ACCGTGACGAGAAGCAAATTTGTCACCAAT 56736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471781921301604