Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178185.1_202017-04-
22] 4,008 sequences; 12,879,491 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq21 125 1e-23
seq88 113 7e-20
seq3938 107 3e-18
seq35 89.7 8e-13
>seq21
Length=64353
Score = 125 bits (138), Expect = 1e-23
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||||||| || ||||| ||||| || |||||||| ||
Sbjct 41273 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 41332
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || || | ||| || || |||||||||||||| || |||||||||||
Sbjct 41333 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGATCCGGAGGG 41392
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||||||||| ||| || ||| ||| ||
Sbjct 41393 ATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 41452
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || || || ||||||| ||||| | ||| ||||||||
Sbjct 41453 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41499
Score = 125 bits (138), Expect = 1e-23
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||||||| || ||||| ||||| || |||||||| ||
Sbjct 41729 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 41788
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || || | ||| || || |||||||||||||| || |||||||||||
Sbjct 41789 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGATCCGGAGGG 41848
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||||||||| ||| || ||| ||| ||
Sbjct 41849 ATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 41908
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || || || ||||||| ||||| | ||| ||||||||
Sbjct 41909 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41955
Score = 120 bits (132), Expect = 5e-22
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || ||||| || | ||||||||| || || || || || ||
Sbjct 41045 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 41104
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| |||| ||| || ||||||||||||||||| || |||||||||||
Sbjct 41105 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 41164
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||||||||| ||| || ||| ||| ||
Sbjct 41165 ATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 41224
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || || || ||||||| ||||| | ||| ||||||||
Sbjct 41225 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41271
Score = 120 bits (132), Expect = 5e-22
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||||||| || ||||| ||||| || |||||||| ||
Sbjct 41501 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 41560
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || || | ||| || || ||||||||||||||||| ||||| ||||||
Sbjct 41561 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 41620
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| ||| || ||| ||| ||
Sbjct 41621 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 41680
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || || || ||||||| ||||| | ||| ||||||||
Sbjct 41681 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41727
Score = 120 bits (132), Expect = 5e-22
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||||||| || ||||| ||||| || |||||||| ||
Sbjct 41957 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 42016
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || || | ||| || || ||||||||||||||||| ||||| ||||||
Sbjct 42017 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 42076
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| ||| || ||| ||| ||
Sbjct 42077 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 42136
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || || || ||||||| ||||| | ||| ||||||||
Sbjct 42137 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 42183
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| || | || || || | || | ||| || || ||| || ||||| || || ||
Sbjct 40817 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCCGA 40875
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| ||||| | ||| |||| ||| || || |||||||||||||||||||| || |||||
Sbjct 40876 CAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGG 40935
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 40936 AATACCTTCCTTGTCTTG 40953
Score = 91.5 bits (100), Expect = 2e-13
Identities = 158/237 (67%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| || |||| || | |||||| || || || || || || ||||| ||
Sbjct 42413 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 42472
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || |||| || || || ||||| ||||||||||| ||||| |||||
Sbjct 42473 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 42532
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| ||||| ||| ||| |||
Sbjct 42533 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 42592
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT--TTTATTAG 146285
|| | ||| || |||||||| || || || || | ||| || ||||| | ||||||
Sbjct 42593 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 42649
>seq88
Length=24671
Score = 113 bits (124), Expect = 7e-20
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || ||||| |||| ||||||||| || || || || || ||
Sbjct 8714 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8655
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||| | ||| || ||||| || |||||||| ||||||||||| || || || |||
Sbjct 8654 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8595
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| ||| || ||| ||| |||
Sbjct 8594 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 8535
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280
|| || || || || ||||| ||||| || || | ||| |||||||| ||
Sbjct 8534 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8485
>seq3938
Length=4823
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || |||||||||||||| ||||| || || || || || ||
Sbjct 1795 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 1854
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | || || ||||| || |||||||| ||||||||||| || || || ||
Sbjct 1855 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 1914
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 1915 ATACCTTCCTTGTCTTG 1931
>seq35
Length=128965
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || || || || ||||| |||||||| || || || || ||
Sbjct 116301 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 116360
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | || || ||||| || |||||||| ||||||||||| || || || ||
Sbjct 116361 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 116420
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 116421 ATACCTTCCTTGTCTTG 116437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743489149327360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |