Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178185.1_202017-04- 22] 4,008 sequences; 12,879,491 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq21 158 2e-33 seq3938 147 4e-30 seq35 145 1e-29 seq88 143 5e-29 seq79 107 3e-18 >seq21 Length=64353 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || ||||| || |||| |||||| ||| |||||||| Sbjct 41270 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 41329 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| ||| ||||| |||||||| ||||||||||| || || Sbjct 41330 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGATCCGGA 41389 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || ||| |||| || || ||||| || || ||||| Sbjct 41390 GGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 41449 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || |||| ||||| | ||| || ||||| Sbjct 41450 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41499 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || ||||| || |||| |||||| ||| |||||||| Sbjct 41726 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 41785 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| ||| ||||| |||||||| ||||||||||| || || Sbjct 41786 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGATCCGGA 41845 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || ||| |||| || || ||||| || || ||||| Sbjct 41846 GGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 41905 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || |||| ||||| | ||| || ||||| Sbjct 41906 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41955 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || ||||| || |||| |||||| ||| |||||||| Sbjct 41498 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 41557 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| ||| ||||| |||||||| ||||| ||||| || || Sbjct 41558 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGA 41617 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| |||| || || ||||| || || ||||| Sbjct 41618 GGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 41677 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || |||| ||||| | ||| || ||||| Sbjct 41678 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41727 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || ||||| || |||| |||||| ||| |||||||| Sbjct 41954 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 42013 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| ||| ||||| |||||||| ||||| ||||| || || Sbjct 42014 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGA 42073 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| |||| || || ||||| || || ||||| Sbjct 42074 GGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 42133 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || |||| ||||| | ||| || ||||| Sbjct 42134 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 42183 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||||| || || || || || || Sbjct 41042 ATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 41101 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | ||| |||||||||||||| ||||||||||| || || Sbjct 41102 GACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGA 41161 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || ||| |||| || || ||||| || || ||||| Sbjct 41162 GGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 41221 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || |||| ||||| | ||| || ||||| Sbjct 41222 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 41271 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || | || || | |||||| || | ||| || ||| || ||||| Sbjct 42410 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 42469 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | || ||||| ||||| || ||||| ||||| || || Sbjct 42470 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 42529 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| || || || || ||||| || ||||| Sbjct 42530 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 42589 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||||||||| || || || || | ||| |||||||| Sbjct 42590 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 42639 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||||| || || || || || || Sbjct 42182 ATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 42241 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| || | || ||||| ||||| || || |||||||| || || Sbjct 42242 GACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 42301 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| || || ||| || || || || ||||| Sbjct 42302 GGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCA 42361 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| ||||||||||| || || || |||| || |||||||| Sbjct 42362 ACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 42411 >seq3938 Length=4823 Score = 147 bits (162), Expect = 4e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || ||||||||||| | || || || || || Sbjct 1789 ATGATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 1848 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 1849 TCAGATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 1908 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| || || || || ||| Sbjct 1909 GGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGAT 1968 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || ||||| | ||| ||||| |||||||| || || |||| ||| Sbjct 1969 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 2012 >seq35 Length=128965 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || ||||| || ||||| | ||||| ||| || || Sbjct 116295 ATGATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAG 116354 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 116355 TCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 116414 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 116415 GGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGAT 116474 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || ||||| | ||| ||||| |||||||| || || || Sbjct 116475 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTT 116512 >seq88 Length=24671 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || |||| ||||| || || || || Sbjct 8723 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTG 8664 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||| ||||||||||| || ||||| |||||| Sbjct 8663 TAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGG 8604 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || || ||||| ||||| || || Sbjct 8603 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAA 8544 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| || ||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 8543 GATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8485 >seq79 Length=27047 Score = 107 bits (118), Expect = 3e-18 Identities = 332/505 (66%), Gaps = 13/505 (3%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||||||| | |||||||| ||||| || || || | || || || Sbjct 156 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 215 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-AA 38950 | ||| ||||| || || |||| || || ||||| | | || | | | | || Sbjct 216 TCCATGAAATCGAAGGGGTTTTCAACCTTGTAGTATTTCT-TGTTACCGAAAGCGACCAA 274 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 | ||| ||||| || || ||||| ||||| |||||| ||| |||||||| | || Sbjct 275 CAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAA 334 Query 39011 TTTAAATGGTAATGCATCATCAATAAAT-TCttt-ttctatttctacagcttgtttaatt 39068 || |||||| || || ||| || | ||||| ||| ||||| ||||| | | | Sbjct 335 AGCAACTGGTAAGGCGTC--CAAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACA 392 Query 39069 atcataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAAC 39126 || | || | || | | | ||| | || | ||| || | | || | Sbjct 393 ATTTT--TTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAATGG---GCGAACAACAAGC 447 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 ||||||| || || || ||||||||||| ||| | || ||||| || ||| ||||| | Sbjct 448 ATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAAC 507 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||| | ||||||||||| | ||| || || || ||||| || || || || | Sbjct 508 CGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGA 567 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 ||| || | ||||| || | || |||| | ||||||| | | | ||| || Sbjct 568 CACCTTCAATGGCGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGAA 627 Query 39307 TCCAATTTATGGCCCAATCTGCTTT 39331 |||| ||| ||||| || || || Sbjct 628 TCCATCTTAAAGCCCATTCGGCCTT 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905090652686400