Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178185.1_202017-04- 22] 4,008 sequences; 12,879,491 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq21 154 3e-32 seq35 140 8e-28 seq88 138 3e-27 seq3938 134 3e-26 >seq21 Length=64353 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||||||||||||||||||||| ||||| || || || |||| || || || |||||||| Sbjct 40834 GACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTC 40893 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||| || || || || | | ||| ||||| ||||||| ||||||||||| || Sbjct 40894 TAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTG 40953 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 || || || ||||| || || |||||||| ||||||||| || || || ||||| Sbjct 40954 AATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTT 41013 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| | ||||| Sbjct 41014 ACCTGTCAGTGTCTTGACAAAAATTTGCAT 41043 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| || || ||||||||||| || || | | ||| || || ||||| ||||| Sbjct 42208 GTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTG 42267 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | ||||| || ||||| | ||||||||||||||||| || Sbjct 42268 CTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTT 42327 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| ||||| ||||| ||| ||||||||| | |||||| || || || || Sbjct 42328 CGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGT 42387 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| ||||| | |||||| Sbjct 42388 CAAAGTCTTAACAAAGATCTGCAT 42411 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || |||||||| || ||||||||||| | || || || || |||||||| ||||| || Sbjct 41531 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 41590 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | |||||| || ||||||| ||||||||||| || || || ||| Sbjct 41591 GCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTG 41650 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || ||||| || ||||||||| || || || ||||| || || ||||| Sbjct 41651 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTT 41710 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 41711 TTGACGAAAATTTGCAT 41727 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || |||||||| || ||||||||||| | || || || || |||||||| ||||| || Sbjct 41987 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 42046 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | |||||| || ||||||| ||||||||||| || || || ||| Sbjct 42047 GCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTG 42106 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || ||||| || ||||||||| || || || ||||| || || ||||| Sbjct 42107 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTT 42166 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 42167 TTGACGAAAATTTGCAT 42183 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || ||||| ||||| || | |||||||| || || ||||| ||||| | || || || Sbjct 42422 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTA 42481 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| |||||||| || || ||||| | | |||||| || ||||| | |||||| Sbjct 42482 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCC 42541 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || || || || ||||| |||||||| || || |||||| || | || Sbjct 42542 TTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTT 42601 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | |||||| || || | |||||| Sbjct 42602 ATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 42639 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| || || ||||||||||| || || | | ||| || |||||||| || || Sbjct 41068 GTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTG 41127 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || | | ||||| || ||||| | ||||| || || || ||||| Sbjct 41128 CTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTT 41187 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| || || ||||| || ||||||||| || || || ||||| || || Sbjct 41188 ACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGT 41247 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | ||||| Sbjct 41248 TAGAGTTTTGACGAAAATTTGCAT 41271 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || |||||||| || ||||||||||| | || || || || |||||||| ||||| || Sbjct 41303 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 41362 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | ||||| || ||||| | ||||| || || || ||||| ||| Sbjct 41363 GCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTG 41422 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || ||||| || ||||||||| || || || ||||| || || ||||| Sbjct 41423 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTT 41482 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 41483 TTGACGAAAATTTGCAT 41499 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || |||||||| || ||||||||||| | || || || || |||||||| ||||| || Sbjct 41759 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 41818 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | ||||| || ||||| | ||||| || || || ||||| ||| Sbjct 41819 GCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTG 41878 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || ||||| || ||||||||| || || || ||||| || || ||||| Sbjct 41879 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTT 41938 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 41939 TTGACGAAAATTTGCAT 41955 >seq35 Length=128965 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | |||||| |||||||| ||||| || || | | ||| || || Sbjct 116312 TCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 116371 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || || ||||| | | |||||||||||| || | |||||||| Sbjct 116372 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 116431 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || |||||| || || || || || |||||||| |||||| || | |||||| Sbjct 116432 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 116491 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | |||||| ||||| Sbjct 116492 GGTCTTACCAGTCAAAGTCTTGACAAA 116518 >seq88 Length=24671 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| ||||| || || ||||||||||| || || | | || || || Sbjct 8703 TCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 8644 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || || ||||| | | |||||||||||| |||| |||||||| Sbjct 8643 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 8584 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || || || || || |||||||| |||||| || || || || Sbjct 8583 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAAT 8524 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | ||||| || Sbjct 8523 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8485 >seq3938 Length=4823 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | || | |||||| || ||||||||||| || || | || || || || Sbjct 1806 TCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAGAGTTCTACC 1865 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || || ||||| | | |||||||||||| || | |||||||| Sbjct 1866 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 1925 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || || || || ||||||||||| |||||| || | |||||| Sbjct 1926 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGAT 1985 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | |||||| || || Sbjct 1986 GGTCTTACCAGTCAAAGTCTTAACGAA 2012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159092474646920