Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178195.1_202017-04- 22] 2,577 sequences; 12,498,113 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1894 271 7e-68 seq3 159 3e-34 seq4 134 1e-26 >seq1894 Length=102925 Score = 271 bits (300), Expect = 7e-68 Identities = 1189/1857 (64%), Gaps = 56/1857 (3%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 ||||| | || ||||||| ||| ||||| || || || | ||| ||||||||||| Sbjct 37039 GATGCAGCTTGGGTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAA 36980 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||||||||| || ||||| | || || | || | | ||| || ||| Sbjct 36979 AAATGCATACTTGTTAGTTTACCCATAGTTGGGGCACGTAAGAACAAATTCAAAGAATGA 36920 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 |||||| ||| | || | ||||||||||| | | ||| ||||| || || Sbjct 36919 GATTGATCAATATAGACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 36860 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050 |||||||| || || |||| | || | | | ||| | | | || |||||| Sbjct 36859 TCCCAAACAGTCTTGTATAAGTCCTTCAATTCTTGTGGAACGTTTGGTAAGCCTTGAATG 36800 Query 37051 GAACCATTATGT---AACACAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACT 37106 || ||||| ||| | || | || | ||| || | | || ||| ||| | | Sbjct 36799 GAGCCATTTTGTGTAATCAGA----TACTGTTTCATACCCTCATCCCAAATACCTAAATC 36744 Query 37107 TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCT 37166 | | || | || || || || || |||||||| || || || ||||| || | | Sbjct 36743 AACCAAGTCACGCAGTAAGTAAGGGTTCACAACCTGGAATTCACCGGATAAGACACGACG 36684 Query 37167 TGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGT 37226 | || |||||| ||| |||||| | | ||||||| || |||||||| ||||| Sbjct 36683 GGAGTACATATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGT 36624 Query 37227 AGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT-TC 37285 |||||||||||||||||||| || | | |||||| | ||||| | | || || Sbjct 36623 GGATGCAGTAGGCATTGGTGCCATGGTCAAGGAATTTCTAACACCATGCTTCATGATATC 36564 Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACC-ACATATCATAT 37344 | || || || | | ||||||||| | | || ||||| || || |||||||| | Sbjct 36563 TTTTCTTAAGGTG-TCCCAATCCCACATGCC-GTAGGGTTTTTGGTCCCACATATCAAAC 36506 Query 37345 TGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTA 37404 ||||| ||||||| | || ||||| | | | || || || || |||| | | | Sbjct 36505 TGTAGTATACCTTGAGAAGCAGGAGATCCTTGGAAAGTTTCGTATGGACCGTCCTTCTGA 36446 Query 37405 GCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 |||||||| ||| || ||| | | ||||| ||| || ||||| || ||||| |||||| Sbjct 36445 GCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAAATAGTTTCAAAGATTTGGATATTT 36386 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 | | ||||| || ||| |||| | | || | || || ||||| | | Sbjct 36385 AGCAAACGGGCTTCCTCAGAATCAAATGGCAAACGTAACAGCATGAAAGTGTCAGCGAGA 36326 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || |||||||| | | | || ||||||||| || |||| ||| | || |||| || Sbjct 36325 CCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATTTTCTCGCTTCTTCAACA 36266 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTT---TAAC-----TAGTATTTTC- 37635 || || ||||| ||| || | | | |||| ||| |||| ||| | |||| Sbjct 36265 GGGTAGTAATTACGATCAATGACTCTGTTTAAATTACGAGTAACAACTTTAGCAATTTCA 36206 Query 37636 -GTAATTATTCTCAACTTGTC----GAA--CATAAATACGTTATTATTAACAAATT-TAC 37687 |||||| || | || |||| ||| | || | | | | | ||| | | Sbjct 36205 TGTAATTTTT-TGAAGTTGTATGTGGAAGTCTTACCATCCTCAGAAGTTTCAATGAATGC 36147 Query 37688 TC--AACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA--ATTGT 37743 | || | || || | | ||||| |||||| ||||||| | || | ||| Sbjct 36146 TGGTAAGGCAACGGAAGCCAAGTTACAAACAGCAGTTTCATCT--GGAGCTGAGTATTCA 36089 Query 37744 ATAATCTCTGTACAG----AGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGA 37799 | ||| || |||| || || | || | || || || || ||||||| || Sbjct 36088 ACAATTTC---ACAGCATAAGTTTGAT-GACTTGATGACACCTAAGTTTTTTTGATTAGA 36033 Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859 |||| | ||||||| ||| || || | | | || || || ||| ||||||| || Sbjct 36032 TTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTACCAGTTTCAGTTTGAGCTTC 35973 Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTT 37917 | ||| || | |||||| || ||||| ||| | ||| | |||||| | Sbjct 35972 CAAAATGGAATACCATAATTTTTGGGCTTT---GATAGTCTTACCACGACCTTCTTTCT- 35917 Query 37918 TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACAT 37977 |||| |||||| | ||| || | || | ||||| ||| || ||| | Sbjct 35916 -CGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAATCGCTTAAACCAGGAGCT 35858 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 |||| | | || | ||| ||| || ||| || || | ||| || | |||| Sbjct 35857 GATGTTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCA 35798 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 || | ||||| |||| || |||||| | | | | ||| || || || ||||| Sbjct 35797 GGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTC 35738 Query 38098 CTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCT 38157 || | | |||||| ||||||||||| ||||||||||| | |||| | | || Sbjct 35737 CTAATATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCA 35678 Query 38158 CCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAAC 38217 || |||||||||| ||| ||||| | || ||| | | |||||||| | | | | | Sbjct 35677 CCAGGTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAACACGAATC 35618 Query 38218 ATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGT 38277 ||||| | || ||| ||||| | |||||| |||| | || |||| ||| | | || Sbjct 35617 ATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGA 35558 Query 38278 ATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTT 38337 || ||| || | || || ||||| ||| ||| || || ||||| |||| || Sbjct 35557 ATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTC 35498 Query 38338 AACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGAC 38397 || || || | || || || ||| ||| ||||| || | | | |||||| ||| Sbjct 35497 AAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGAC 35438 Query 38398 ATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTT 38457 |||||||| |||||| ||||| || || || || ||||| || || | || ||||| Sbjct 35437 ATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATATTTT 35378 Query 38458 TCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGA 38517 |||| | ||||| ||||||| || | || ||||| | ||||| || ||||| Sbjct 35377 AGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATATCTCTACCGTGGATGCCTAGT 35318 Query 38518 GATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGA 38577 | || ||||| | | ||||||||| | ||| | || | || | | |||| | Sbjct 35317 GCGACTCTCATAATTAAATGTTGTGGACGTTCGGCCACTTGACCGTTGATTCTTAGTAAA 35258 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA-TGAATAATCTCTATCGTA 38633 || || ||| || ||||| | ||||||||||| || |||| ||||||| || || Sbjct 35257 TAAGAACGTTCCAAAGTTTTAAAACCAAAATAACTGTACTGAA-AATCTCTGTCATA 35202 >seq3 Length=304868 Score = 159 bits (176), Expect = 3e-34 Identities = 461/707 (65%), Gaps = 2/707 (0%) Strand=Plus/Plus Query 37928 TATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGAC 37987 |||||| || | ||| |||| ||||| ||||| ||| ||||| | | || Sbjct 217172 TATATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGTG 217231 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 | | || || ||| |||| | || || |||| ||| || | |||||| | ||||| Sbjct 217232 AAAATAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCATA 217291 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 |||| || |||||| | | | | |||||| || || | ||||| | | Sbjct 217292 GAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCGA 217351 Query 38108 GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTT 38167 ||| ||||| ||||| || |||||||| || | ||| | | || || ||||| | Sbjct 217352 CAAAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCT 217411 Query 38168 TATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTA 38227 | | ||| ||||| | | ||| | | || ||||| | | | | |||||| | | Sbjct 217412 TGTTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATCA 217471 Query 38228 TACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA 38287 || || || | ||||| |||| | ||||||| ||| | | || || || | | Sbjct 217472 ACCCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTGA 217531 Query 38288 TCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAA 38347 | | || | ||||||||| ||| || || | ||| |||| ||| || |||||| Sbjct 217532 TATGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCAT 217591 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 | |||||||| ||| ||||||||| || | | || ||||| |||||||||||| Sbjct 217592 AAATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGAT 217651 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 ||| || || ||||| ||||| || || || || || |||| || || ||||| Sbjct 217652 GTGGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCA 217711 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 ||||||| || | | ||| || ||||| | || || |||||||| | || | || Sbjct 217712 AATTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGCA 217771 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTT 38587 ||| || ||| || || | |||| | || | ||| || | || | ||||| | Sbjct 217772 TTACCAAATGCTGAGGACGTTCTGCCACTTCACCGTTCAGTCTTAGCAAGTACGAACGCT 217831 Query 38588 CTAATGTTTTTATTCCAAAATAACTATA-TGAATAATCTCTATCGTA 38633 | | ||| || | ||| ||||| |||| || | |||| |||||||| Sbjct 217832 CCAGTGTCTTGAATCCGAAATACGTATACTGGA-AATCCCTATCGTA 217877 >seq4 Length=304383 Score = 134 bits (148), Expect = 1e-26 Identities = 397/602 (66%), Gaps = 24/602 (4%) Strand=Plus/Plus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || || ||||| || || |||||||||||||||| || | ||| || ||| Sbjct 61653 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 61712 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || ||||| |||||||||| |||| ||||| | ||| || || | ||||| ||||| Sbjct 61713 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 61772 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCT-T 11796 || || || | || || | | ||||| || |||| |||||| ||| | | | | Sbjct 61773 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCA 61832 Query 11797 GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852 | || || |||||| || ||||| || || ||| | || ||| | || | Sbjct 61833 GCGTCTTGA-ATCCATCTTAAAGCCCATTCGGCCTTC----TCACCGATTTCTGGGATGG 61887 Query 11853 TTTCTATAGCGTTAAATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTAT 11910 | | || || || || | ||| || ||||| || || | | || ||||| || Sbjct 61888 TGTGAATGGCATTGAACAAGAATTCA--CTTTCTTTAGGGTCCTTGATGTAGGTATCGAT 61945 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 || || || |||| || ||||||||||| || ||||| || || ||||||| Sbjct 61946 CAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACT 62005 Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030 |||||||| | || || || | || |||| | || || ||||| ||||| Sbjct 62006 CTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 62065 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTA-TATGTTTTATAAAGTATTTTTCGTCTTTAG 12089 ||| ||| || || ||||| || || | | || || || || | |||| | | | Sbjct 62066 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTG-GAAATGAAAAATCTCTCGT-TCTCG 62123 Query 12090 TTAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAA 12145 || || || | ||| |||| | ||| || || ||||| | ||||||| ||||||| Sbjct 62124 TTCATTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAG 62183 Query 12146 AAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||| || | | | || || || |||||| ||||| ||||| |||||||||| | Sbjct 62184 AAAGAAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGA 62243 Query 12206 AC 12207 || Sbjct 62244 AC 62245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509707644880