Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178195.1_202017-04- 22] 2,577 sequences; 12,498,113 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq543 123 2e-23 seq1802 93.3 3e-14 seq3 93.3 3e-14 >seq543 Length=339522 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | ||||||||||| | || |||||| || ||||| ||||| || Sbjct 286111 ACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGA 286052 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| |||| ||| || |||||||||||||| | || |||||| | || Sbjct 286051 CAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGG 285992 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| ||| || | ||| | |||||| ||||| | Sbjct 285991 AATACCTTCCTTGTCTTGAATTTT-ACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 285933 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || ||||||| ||||| || || || |||||| Sbjct 285932 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 285883 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | |||||||| || ||||| || ||||| |||||||| || || Sbjct 286567 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 286508 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | |||| || | || || |||||||| ||||| | ||| |||||| | || Sbjct 286507 CAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGG 286448 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| | | ||| | || | |||||| ||||| | Sbjct 286447 GATACCTTCCTTGTCCTGGATTTTC-GACTTAACGTTATCGATCGTGTCGGAGGATTCAA 286389 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || || || ||||||||||||||| Sbjct 286388 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCATA 286339 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || ||| | ||||| ||| ||| || || ||||||||||| || Sbjct 285883 ACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGA 285824 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| || | || || |||||||| ||||| | || |||||| | || Sbjct 285823 CAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 285764 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||||| | | ||| | ||| | ||| ||| ||||| | Sbjct 285763 GATACCTTCCTTGTCTTGAATTTTC-GACTTAACGTTGTCGATGGTATCGGAAGATTCAA 285705 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || |||||||| || || || || || || ||||||||| Sbjct 285704 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATA 285655 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || ||| | ||||| ||| ||| || || ||||||||||| || Sbjct 286339 ACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGA 286280 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| || | || || |||||||| ||||| | || |||||| | || Sbjct 286279 CAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 286220 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| ||| || | ||| | |||||| ||||| | Sbjct 286219 GATACCTTCCTTGTCTTGAATTTT-ACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 286161 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || ||||||| ||||| || || || |||||| Sbjct 286160 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 286111 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | |||||||| || ||||| || ||||| |||||||| || || Sbjct 286795 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 286736 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || | ||| || || ||||||||||| | ||| ||||| | || Sbjct 286735 CAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGG 286676 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||| || ||| || | ||| | |||||| ||||| | Sbjct 286675 GATACCTTCTTTATCTTGAATCTT-ACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 286617 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || ||||||| ||||| || || || |||||| Sbjct 286616 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 286567 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| ||||| | || || | || |||||| ||| ||||| || ||||| || Sbjct 287026 GTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTC 286967 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || || || | | || || | ||| || |||||||||||||| | ||||| ||| | Sbjct 286966 CGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGG 286907 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | |||||| ||||| ||||||| | | ||| | ||| | ||||| |||| Sbjct 286906 AGGAATACCTTCCTTGTCTTGAATTTTC-GACTTAACGTTGTCAATAGTGTCAGAAGATT 286848 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || |||||||| | || || ||||| || |||||| Sbjct 286847 CAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCATA 286795 >seq1802 Length=515830 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||||||| | || ||||| |||||||| || ||||| |||||||| |||| Sbjct 507147 CACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 507206 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || | | || |||||||| || || ||||| ||||| | || || || | | Sbjct 507207 ACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 507266 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| || || | | |||| ||| | ||||| ||||| Sbjct 507267 GAATACCTTCCTTGTCTTGGATCTT-GGACTTGACATTGTCAATAGTGTCAGAAGATTCA 507325 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || ||||| ||||| || || || || || ||||| Sbjct 507326 ACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 507375 >seq3 Length=304868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || || || || | |||| |||||||| |||||||| || || Sbjct 44740 ACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 44681 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | |||| |||||||| || || ||||| ||||| | || || || | || Sbjct 44680 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 44621 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||| || || | |||| ||| | ||||| ||||| | Sbjct 44620 GATACCTTCCTTGTCTTGAATCTT-TGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 44562 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | || | ||||| || ||||| || || || || ||||| Sbjct 44561 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 44522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693676331840