Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178195.1_202017-04- 22] 2,577 sequences; 12,498,113 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq543 116 2e-21 seq1802 100 2e-16 >seq543 Length=339522 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | |||||||||||| | || ||| || |||||||||||||| || Sbjct 286110 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 286051 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| ||||||||||| || || | ||||| || || || Sbjct 286050 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 285991 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| |||| ||| | ||| ||||| || || Sbjct 285990 ATACCTTCCTTGTCT-TGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 285932 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| || || || |||| ||||| || ||||| ||||| Sbjct 285931 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 285884 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| | ||| | ||| |||||| |||||||| ||||| || Sbjct 285882 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 285823 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| || || ||||||||||| || || | ||||| || || || Sbjct 285822 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 285763 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | |||||| | || || || || || Sbjct 285762 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAAC 285704 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||||||||| || || || || ||||||||||| Sbjct 285703 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 285656 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||||||||| || ||||| |||||||| ||||| || || || Sbjct 286566 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 286507 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| || || ||||||||||| || || | |||||| || || || Sbjct 286506 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 286447 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | |||||| || || ||||| | || || Sbjct 286446 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 286388 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||||||||| || || || ||||| |||||||| Sbjct 286387 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 286340 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| | ||| | ||| |||||| |||||||| ||||| || Sbjct 286338 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 286279 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| || || ||||||||||| || || | ||||| || || || Sbjct 286278 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 286219 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| |||| ||| | ||| ||||| || || Sbjct 286218 ATACCTTCCTTGTCT-TGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 286160 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| || || || |||| ||||| || ||||| ||||| Sbjct 286159 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 286112 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||||||||| || || || || || |||| | ||||| ||||| Sbjct 286998 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGC 286939 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || || | || ||||| || || | || ||||||||| ||| ||| Sbjct 286938 TTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCT-TGAATTTT 286880 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | |||||| | ||| ||||| || || || | |||||| || ||||| || Sbjct 286879 CGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 286820 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || |||||||| ||||| Sbjct 286819 CAGTGTCTTGACAAAAATTTGCAT 286796 >seq1802 Length=515830 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || ||||| |||||||| ||||| || || || Sbjct 507149 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 507208 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||| ||||| ||||| || || | |||||||| || || Sbjct 507209 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 507268 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | ||| ||||| || || Sbjct 507269 ATACCTTCCTTGTCTTGGATCTTG-GACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 507327 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| ||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 507328 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 507379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719715228441