Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178205.1_202017-04- 21] 766 sequences; 11,742,880 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq717 87.8 2e-12 seq516 87.8 2e-12 seq520 84.2 2e-11 >seq717 Length=48821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | || ||| | || | || | |||||||||||||||||| || ||||| Sbjct 33161 GTTACCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTC 33102 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 || ||| ||| | || || || ||||| || ||| |||| | ||| |||||||| Sbjct 33101 CGACAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAAATCAATCTTTGCTGGTCTGG 33042 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| || ||| ||||| | | | | ||| ||| | || Sbjct 33041 AGGAATACCTTCCTTGTCTTGAATTTTTGACTTCACGTTGTCAATAGTGTCAGAAGATTC 32982 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | || ||||| || |||||||| Sbjct 32981 AACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 32931 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||||| ||||| | ||| || ||||||||||| |||||||| || || | | Sbjct 32245 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 32186 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| |||| || ||||| || || ||| | || | ||| || || || || Sbjct 32185 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 32126 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || || || | | ||| ||||| | || | Sbjct 32125 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 32066 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || ||||| || || ||||| || || ||||| Sbjct 32065 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 32019 >seq516 Length=220293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || | |||| || | ||| || |||||||| ||||| ||||| | | Sbjct 8714 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8655 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | || |||| || || || ||| | || | ||| || ||||| || Sbjct 8654 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8595 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | ||| ||| | || | Sbjct 8594 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 8535 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| |||||| ||||| |||||||| || ||||| || |||||||| ||| Sbjct 8534 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 8484 >seq520 Length=171470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 ||||||||||| || ||||||||||| ||||| | || |||| |||| |||| || Sbjct 127845 TGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGC 127904 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || | ||| || ||||| || | ||||||||||| |||||| Sbjct 127905 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTT 127964 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | | ||| ||| | || ||||| || |||||||| || || Sbjct 127965 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTC 128024 Query 21153 AACGTTTTGACAAA 21166 || || |||||||| Sbjct 128025 AAAGTCTTGACAAA 128038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422255257946456