Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178205.1_202017-04- 21] 766 sequences; 11,742,880 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq717 129 4e-25 seq516 100 2e-16 >seq717 Length=48821 Score = 129 bits (142), Expect = 4e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| |||||||| || | ||| |||||||| | ||||| || ||| Sbjct 32929 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 32870 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || || | ||| || || ||||||||||||| ||||||||| | || Sbjct 32869 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 32810 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||||||| || ||| | ||| |||||| || ||| |||||| || || | Sbjct 32809 ATACCTTCTTTATC-TTGAATTTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAA 32752 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 32751 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 32703 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| ||||||||||| | || ||| || || | || ||||| ||| Sbjct 32701 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 32642 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || || ||||| ||||||| |||||||| | || Sbjct 32641 AGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGA 32582 Query 43003 ACACCTTCTTTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 | |||||| || || ||| || || || || || | | ||||| || || Sbjct 32581 ATACCTTCCTTGTC-TTGAATTTTCGAC---TTAACGTTGTCGATAGTGTCAGAAGATTC 32526 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||||| || || || || || || |||||||||||||| Sbjct 32525 AACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 32475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | |||||| || Sbjct 33128 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACC 33069 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTT 43031 |||||||||||||| || || || | || | |||||| || || | | | ||| Sbjct 33068 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-----TTGAATTTTT 33014 Query 43032 GACT-----CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 |||| || ||| ||||| || || || |||| |||||||| || || || Sbjct 33013 GACTTCACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTC 32954 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 32953 AGTGTCTTGACGAAAATTTGCAT 32931 >seq516 Length=220293 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 8714 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8655 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 8654 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8595 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 8594 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 8535 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 8534 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366039676428