Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178205.1_202017-04- 21] 766 sequences; 11,742,880 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq621 140 2e-28 seq717 125 5e-24 seq520 109 4e-19 seq516 105 4e-18 >seq621 Length=7318 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 310 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 369 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 370 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 404 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 2298 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 2357 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 2358 GCCAATATTTAGCTTTA 2374 >seq717 Length=48821 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | ||| | ||| | ||| |||||| ||||| |||||||||| Sbjct 32247 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 32188 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| |||| || || |||||||| || | | ||||||||| Sbjct 32187 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 32132 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| ||||| |||||| ||| || || | || ||||| | | Sbjct 32131 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 32072 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || |||||||| ||||| || || ||||| |||||||| Sbjct 32071 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 32019 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||||||||| |||||||| |||||||| || ||||| |||| Sbjct 32475 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 32416 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| |||| || || |||||||| || | | |||||||| | | Sbjct 32415 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 32356 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||||| ||| || || | || || || ||| | Sbjct 32355 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCGA 32296 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || |||||||| ||||| || || || || |||||||| Sbjct 32295 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 32247 Score = 123 bits (136), Expect = 2e-23 Identities = 172/239 (72%), Gaps = 9/239 (4%) Strand=Plus/Minus Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||| |||||||| ||||| | ||| || | ||||||||| ||||||||||||||||| Sbjct 33165 ATCAGTTACCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGT 33106 Query 38143 AATCAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGT 38198 | || |||| |||| | || |||| |||||| |||||||| || | | ||| Sbjct 33105 AGTCCGACA----GCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAAATCAATCTTTGC 33050 Query 38199 TGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258 || || | || | ||||| ||||| ||||||| |||||| || | | ||| || Sbjct 33049 TGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTTGACTTCACGTTGTCAATAGTGTCA 32990 Query 38259 CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||| |||| || ||||| ||||| |||| || || ||||| || ||||| Sbjct 32989 GAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 32931 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||||||||| |||||||| |||||||| || ||||| |||| Sbjct 32931 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 32872 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || |||| ||| || || ||||| || | | |||||||| | | Sbjct 32871 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 32812 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || |||||| || || || | | ||| || | ||||| Sbjct 32811 GGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 32752 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||| || ||||| || || || | ||||| ||||| || ||||| Sbjct 32751 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 32703 Score = 107 bits (118), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | |||||||||||| | || ||| || ||||| || ||||||| Sbjct 32703 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 32644 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| || | ||| || || ||||| || | | ||||||||| Sbjct 32643 ACA----GCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTTTGTTGATCT 32588 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | ||||| ||||| |||||| ||| || || | || ||| || | | Sbjct 32587 GGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGAT 32528 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| |||| || ||||| ||||| |||| || || || || || ||||| Sbjct 32527 TCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 32475 >seq520 Length=171470 Score = 109 bits (120), Expect = 4e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || || || | |||| || |||||||| ||||| |||| Sbjct 127819 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 127878 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| || ||||| || || ||||| || | | |||||| || | | Sbjct 127879 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 127938 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| ||| ||| ||||| | | ||| || | ||||| Sbjct 127939 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 127998 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 |||| || || || || ||||| ||||| || || || || Sbjct 127999 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 128038 >seq516 Length=220293 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 8715 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8656 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | || || ||||| || || ||||| || | | |||||| || | || Sbjct 8655 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8596 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | | ||| || | |||||| Sbjct 8595 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8536 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | |||||||| ||||| || || || || ||||| || ||||| || Sbjct 8535 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944073058546