Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178225.1_202017-04- 21] 645 sequences; 11,761,021 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq31 178 1e-39 seq376 136 5e-27 seq447 129 7e-25 seq420 125 8e-24 seq243 118 1e-21 >seq31 Length=90356 Score = 178 bits (196), Expect = 1e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| || || || |||||||| || || |||||||| || | Sbjct 57929 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 57870 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | |||||||| |||||||| || ||||||||||||||| Sbjct 57869 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 57810 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | |||||||| ||||||||||| || |||| | | || || | ||||| ||| Sbjct 57809 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 57750 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||| ||||||||||| || |||||| Sbjct 57749 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTTG 57717 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || |||||||| || || |||||||| || Sbjct 58157 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 58098 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || ||| ||||| || || || || || ||||| || || Sbjct 58097 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 58038 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | |||||||||||||||||||| || |||| | | ||| | | ||||| || Sbjct 58037 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 57978 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||||||||| |||||||| Sbjct 57977 ATCCAAAAGGAATCTACTCTTCA 57955 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| || || || ||| | |||||||| || Sbjct 58613 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 58554 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | ||||| ||||||||||| || || |||||||| || Sbjct 58553 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 58494 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| |||||||| || || || | | | ||| | | ||||| || Sbjct 58493 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 58434 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||||||||| |||||||| Sbjct 58433 ATCCAAAAGGAATCTACTCTTCA 58411 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || |||||||| || || |||||||| || Sbjct 58385 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 58326 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || ||||||||| |||||||| || ||||||||||| || Sbjct 58325 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 58266 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | |||||||| ||||||||||| || || | | | || || | || ||||| Sbjct 58265 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 58206 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || || || || || | ||| | || ||| Sbjct 58205 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTG 58173 >seq376 Length=220294 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||||||||| || || ||||| || | Sbjct 211790 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 211731 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || || |||||||| || ||||| || ||||| Sbjct 211730 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 211671 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | || |||| | | || | | ||||| || Sbjct 211670 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 211611 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| ||||| || | |||||| Sbjct 211610 ATCCAAAAGGAATCTACTCTACACTTGGTCTTG 211578 >seq447 Length=321144 Score = 129 bits (142), Expect = 7e-25 Identities = 320/476 (67%), Gaps = 21/476 (4%) Strand=Plus/Plus Query 81223 TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCG 81281 || ||| |||||||||| ||||| ||||| || || | ||||| || | ||| || Sbjct 54755 TCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCA-CG 54813 Query 81282 CGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCA 81341 ||||| | ||| ||||| | | || | ||| || | ||| || |||||||| Sbjct 54814 AATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAAGATATCAGCATGCCA 54873 Query 81342 TGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGGCCACCCTGGTTGACGTAAC 81397 ||| ||||| || | ||| | || || ||| | |||||||||| || |||| Sbjct 54874 TGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTT-ATTACCACCCTGGTCAACATAAC 54932 Query 81398 GGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTAC 81457 |||| || || || ||||| | |||||| || | ||| | || |||||| |||| Sbjct 54933 GGGCGGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTAC 54992 Query 81458 CCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACC 81517 | | || || || | | || | || ||| ||||| || ||||| | | Sbjct 54993 CAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAG--C 55050 Query 81518 ACTTT--GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTT 81575 | ||| |||||| |||||| |||| ||| || ||||| |||||||| || | Sbjct 55051 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 55110 Query 81576 TTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAAC 81633 |||||| ||| ||||||||| ||||| ||||| |||| ||| |||||||||||| Sbjct 55111 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGG--TTTTGGAGTACCGGCATTGAAC 55168 Query 81634 AGTGTTGGGGTCGCGTGAATGAAATAACGGTTT---GACATCAGGTCATAGGTTTC 81686 | ||||| | |||||| | ||||| ||| ||||||| || ||| ||||| Sbjct 55169 AACGTTGGAGAGGCGTGAGTAAAATA---TTTTAGAGACATCAAGTTATACGTTTC 55221 >seq420 Length=299084 Score = 125 bits (138), Expect = 8e-24 Identities = 338/512 (66%), Gaps = 15/512 (3%) Strand=Plus/Plus Query 81232 TTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTC 81290 ||||||||| ||||||||||| || || | ||||| || | ||| || || || Sbjct 213397 TTCATGAAAAGATCAGGGATCCATAGAGCAGGGAACAAATCTCTTGCA-CGAATTTCTTC 213455 Query 81291 ATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAG 81350 | ||| || | | | |||| |||||| | ||| || |||||||||||||||| Sbjct 213456 CTTACCATGTGTTTTTCTGATATCGACAAAGTCGAAGATATCTGCATGCCATGGCTCCAA 213515 Query 81351 ATACACGGCGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 | | ||||| | || |||| || ||||||||| || ||||||||||| Sbjct 213516 GAAAAGGGCGAAAGCACCAGGTCTCTTGTTAC---CACCCTGGTCCACATAACGGGCAGT 213572 Query 81405 CGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT 81464 || || ||||| | |||||| || | || | ||| |||||| ||||| |||| Sbjct 213573 ATTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAAGTACCGTTGGTACCAGCGAT 213632 Query 81465 ACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTT-- 81522 | || || ||| || | ||| |||| |||||| | ||||||| || ||| Sbjct 213633 ATAAGAACCTGTGGAACGGATGTTGTTGATATGAAGACCAACACCACCTG--CAGTTTTG 213690 Query 81523 GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATG 81582 |||||| |||||| |||| || |||||||| || ||||| || | |||||| Sbjct 213691 GAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCGATAGAGTCATCCTTCATG 213750 Query 81583 TCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGG 81642 ||| |||||||| ||||| ||||| | | || || ||||| | |||||| Sbjct 213751 GCAATTAAGAAACATGAAGACATTTGAGGATGTGGCGTACCAGCGTTGAATAAAGTTGGG 213810 Query 81643 GTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATA 81702 | |||||| |||| || | ||||||| | ||| || | | || | ||| Sbjct 213811 GAAGCGTGAGTGAAGTATCTTAACGACATCAAATTATAAGTCTTCAGCACAGATTCGATA 213870 Query 81703 TCGTCACCGTGAATACCGATAGCTACACGCAT 81734 ||| ||| || ||||| | || |||||||| Sbjct 213871 TCGCTACCATGGATACCTAGCGCCACACGCAT 213902 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||||||||| | || || ||||| || ||| | || ||||| || ||| | ||| Sbjct 48498 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 48557 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || ||||| |||||||| || || || || ||||| || | | Sbjct 48558 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 48617 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||||||||||||| | || || | | | ||| | | ||||| || | ||||| Sbjct 48618 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 48677 Query 27595 GAATCCACTCTTCATCTAGTCTTG 27618 ||||||||| | || |||||||| Sbjct 48678 GAATCCACTTTGCACTTAGTCTTG 48701 >seq243 Length=92514 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| | || || ||||| || ||| | || ||||| || ||| | ||| Sbjct 30164 CTTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCAT 30223 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || || |||||||| || || || || ||||| || | | Sbjct 30224 TGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 30283 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||||||||||||| | || || | | | || ||| | ||||| || ||||||| Sbjct 30284 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAA 30343 Query 27594 GGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| | ||| | |||||| Sbjct 30344 GGAATCCACTTTACATTTGGTCTTG 30368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305801872400