Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178245.1_202017-04- 21] 995 sequences; 11,808,444 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq30 125 6e-24 seq255 100 2e-16 seq3 93.3 3e-14 >seq30 Length=55221 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||||||| ||||||| || || || ||| | || || || | Sbjct 23360 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 23301 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || ||| || ||| || || ||||| | || ||||| Sbjct 23300 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 23241 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| ||||| || ||||| |||| | ||| || | || || ||| Sbjct 23240 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 23181 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||||||||| |||||||||||||| |||| || Sbjct 23180 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 23134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||||||| ||||||| || || || ||| | || || || Sbjct 23132 ATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 23073 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || || ||| || || ||||| | || || ||| Sbjct 23072 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 23013 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| ||||| || || || || | | ||| || |||||||||| Sbjct 23012 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 22953 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 |||||||||||||| || | ||| | || ||||| ||| | || || || Sbjct 22952 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGTAA 22903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| ||||| | || | ||| ||||| ||||| || |||| | ||| || | ||| Sbjct 23474 GATCAACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGAC 23415 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| |||||||| ||||| | ||| |||||||||||||| |||| || Sbjct 23414 TACAACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 23362 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| ||||| || || |||||||| || | ||| || || | Sbjct 23816 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 23757 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || || ||| || || ||||| | || ||||| Sbjct 23756 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 23697 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| ||||| ||||| || |||| | ||| || | || |||||| Sbjct 23696 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 23637 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| |||||||| || || || Sbjct 23636 ATTCAGAAGGAGTCCACCTTACA 23614 >seq255 Length=229416 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| ||||| |||||||| || || || |||||| | ||| || || Sbjct 220936 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 220877 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||| | | | | || || ||||| || || ||||| | || || Sbjct 220876 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 220817 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || ||| | || | ||| ||||| || |||| || | | ||| || | |||||| Sbjct 220816 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 220757 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| ||||| | ||| |||| ||||||||| |||| || Sbjct 220756 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 220707 >seq3 Length=325970 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 107564 TTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGT 107623 ||||||||| ||||| || || || ||||| || | ||| || || || ||| | Sbjct 249865 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 249806 Query 107624 CGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACT 107683 | | | || || ||||||| || || ||||| | || || || || ||| | Sbjct 249805 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 249746 Query 107684 TATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAA 107743 || | ||| ||||| || |||| |||| | ||| || | ||||||||||||||||| Sbjct 249745 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAA 249686 Query 107744 GGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || |||||| | || ||||||||| |||| || Sbjct 249685 AGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 249647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398871962995555