Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178255.1_202017-04-
21] 1,675 sequences; 11,916,863 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq712 131 1e-25
seq1277 109 5e-19
seq3 102 7e-17
seq306 89.7 4e-13
>seq712
Length=155938
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610
|| |||||||| || || || || ||||| ||||| || |||||| ||| ||| ||
Sbjct 8566 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 8625
Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670
|| || || | | | || ||||| || ||| ||||| || || | || ||
Sbjct 8626 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 8685
Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730
||||| ||| | |||||||| || || |||||||||||| || |||| || |||| ||
Sbjct 8686 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 8745
Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780
||||| ||||| ||||||||||| ||| |||| || ||||| |||| ||
Sbjct 8746 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 8795
>seq1277
Length=47777
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| ||||| || ||| | || ||||| || || ||| || ||| ||||
Sbjct 31876 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 31935
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | | ||| ||||| ||||| || || | || |||||||
Sbjct 31936 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 31995
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| ||| | |||||||| || || ||| |||||||| || ||| || | |||||||||
Sbjct 31996 CAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGATGGTAGAACGCTGTCTGATTATAAC 32055
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
||||| ||||| ||||| |||| |||| || ||||| |||| || ||
Sbjct 32056 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTAT 32105
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || || || || ||||||||||| || || ||| | ||
Sbjct 31648 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 31707
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| ||| | | | | ||| |||||| ||||| || || | || |||||||
Sbjct 31708 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 31767
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| | |||||||| || || || | ||||| || ||| || | || || |||
Sbjct 31768 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 31827
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||| ||||||||||| ||| |||| || ||||| |||| || ||
Sbjct 31828 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTAT 31877
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| || || ||||| |||| || || || || ||| || ||| ||||
Sbjct 32104 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 32163
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | |||| ||||| || ||||| || | || ||||||
Sbjct 32164 GACACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 32223
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||| | || ||||| || || ||| | |||||| || ||| || | || || |||
Sbjct 32224 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 32283
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||| ||||||||||| ||| |||| || ||||| |||| || ||
Sbjct 32284 ATCCAAAAGGAATCTACTCTTCACCTGGTGTTGAGATTGAGAGGTGGTAT 32333
>seq3
Length=255791
Score = 102 bits (112), Expect = 7e-17
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622
||||| || || || || ||||| ||||| || ||| ||| |||| || || |
Sbjct 2668 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 2727
Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682
| | || ||||| ||| || ||||| || || | || || ||||| ||| |
Sbjct 2728 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 2787
Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742
|||||||| || || ||||||||||| || ||| || | || || ||||||||||||
Sbjct 2788 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 2847
Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786
||||| ||| ||||| | || || ||||| |||| || || ||
Sbjct 2848 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTATCAT 2891
>seq306
Length=23280
Score = 89.7 bits (98), Expect = 4e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 28563 TTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTG 28622
|| || || || || || ||||| ||||| || ||| ||| |||| || || |
Sbjct 12252 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 12311
Query 28623 GCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTT 28682
| | || ||||| || ||| ||||| || || | || || ||||| ||| |
Sbjct 12312 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 12371
Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742
|||||||| || || ||||||||||| || |||| | | || || ||||| |||||
Sbjct 12372 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 12431
Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786
||||| ||| | || |||| || |||||| |||| || || ||
Sbjct 12432 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTATCAT 12475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425396115759825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |