Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178255.1_202017-04- 21] 1,675 sequences; 11,916,863 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq21 181 3e-40 seq3 147 6e-30 seq106 131 5e-25 seq1086 102 2e-16 seq2 84.2 6e-11 >seq21 Length=87711 Score = 181 bits (200), Expect = 3e-40 Identities = 482/732 (66%), Gaps = 12/732 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| |||||||| | ||| || ||||||| ||||| || || || || Sbjct 63336 GTATTCAACAATTTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTTTGATT 63395 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 |||||| |||||||||||||||||||| | || | | || || || || || | || || Sbjct 63396 AGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGTGTACCAGTTTCAGTTTGAGC 63455 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG--CCTTCC 155807 |||| ||| ||| | | |||| |||| | || || | ||||| Sbjct 63456 TTCCAAAATGGAATACCATAATTTTTGGGC-----TTTGATAGTCTTACCACGACCTTCT 63510 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG- 155866 ||| || |||| || | | || |||||||||||||| || | ||||| Sbjct 63511 TTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAACAATCGCTTAAACCAGGA 63570 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | | || | | || | | ||| | ||| | ||||||| ||| || | Sbjct 63571 GCTGATGTTGGAG-AGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAG 63629 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| ||| | |||| ||| | || ||||| ||||| | ||||| || Sbjct 63630 ATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTT 63689 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||||| | || | || || ||||||| ||| ||| ||||| || | ||||| Sbjct 63690 CTTCCTAATATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAA 63749 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| || || |||||||| || ||||| || ||||| |||||||| |||| Sbjct 63750 CGCACCAGGTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAACACG 63809 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 | ||||||||| | ||| || ||||| || || || || ||| | ||||||| ||| Sbjct 63810 AATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGA 63869 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 |||| ||||| |||||||| ||||||||||| | ||| ||||| ||| ||||| Sbjct 63870 ACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTC 63929 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 ||| | || | | |||| || || ||||| || || | ||| | | | | || || Sbjct 63930 CTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGA 63989 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | ||||||| ||| || || || ||||| | || || | || ||| ||||||| Sbjct 63990 GGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATA 64049 Query 156344 CTTATTAGACAT 156355 || |||||| Sbjct 64050 TTTTAGAGACAT 64061 >seq3 Length=255791 Score = 147 bits (162), Expect = 6e-30 Identities = 240/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCC 156068 ||||| | ||| |||||||| | | || ||| |||| |||||| |||||| Sbjct 168954 ATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTGTTACCACCC 169013 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || ||||| || ||||| |||||||| |||| | ||||||||| | || || ||| Sbjct 169014 TGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAA 169073 Query 156129 GTGCCATTGGTTCC-GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCC 156187 || || ||||| || |||| ||| ||||| | || || | || | ||||| || || Sbjct 169074 GTACCGTTGGTACCAGCGA-TATAAGAACCTGTGGAACGGATGTTGTTGATATGAAGACC 169132 Query 156188 AATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTC 156247 || |||||||| ||| ||||| ||| ||||| || | ||||| |||||||||| Sbjct 169133 AACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTC 169192 Query 156248 AATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCC 156307 ||||| ||||| | ||| | | || | || ||| | |||||| |||| || || Sbjct 169193 GATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGATGTGGCGTACC 169252 Query 156308 AGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA-CTTA 156347 ||||||||||| || || | || ||| | || || |||| Sbjct 169253 AGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTA 169293 >seq106 Length=437836 Score = 131 bits (144), Expect = 5e-25 Identities = 256/378 (68%), Gaps = 3/378 (1%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||| ||||| ||||||| | ||||||| || | ||||||| ||| || || | Sbjct 60100 CCTGTCAAATCTACCAGGCCTTAATAATGCTTTATCGAGAATATCGGGTCTATTGGTACC 60041 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || || ||||||| || | | | | || |||||||| | ||| |||||||| Sbjct 60040 AGCTAAAACAACAACGTGGTCAGCTGGAGTGAAACCATCCATTTCTACTAACATTTGATT 59981 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || || | || || |||||||| | |||| ||| |||| | || |||| Sbjct 59980 TAGCGTGTTCTCTCTCTCATCATTGGCACCTGAAAAATTACCCTTTTGTCTTGCTTTT-- 59923 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | |||||||||||||||||| || | | | || | ||||| ||| ||| || Sbjct 59922 -CCTATAGCATCAATTTCGTCAATAAACACAATCGAGGGTGCATTTTCTCTTGCAGTTTT 59864 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || |||||||| | | ||| |||| ||||||| |||||||||||||||| ||| | Sbjct 59863 GAACAAATCTCTTACTCTTGCTGCACCAACACCAACAAACATTTCTACAAATTCTGAACC 59804 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || || | || | ||| ||||| |||||| |||| | || || | || || Sbjct 59803 AGAAACAAAATAAAACGGAACACCGGCTTCACCTGCTGTTGCCTTTGCAAGCAAAGTTTT 59744 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| || || ||||| || Sbjct 59743 ACCGGTACCTGGTGGACC 59726 >seq1086 Length=94467 Score = 102 bits (112), Expect = 2e-16 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| |||| ||| || ||| || ||||| | | || | ||||||||| Sbjct 78773 TTTCTTGTGGTGTTATCGTAATGAACCATGATATCTTCTAGAGCTTTCACTAAACGACGT 78714 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| | |||||| || || ||||| || ||||| ||||||||||| Sbjct 78713 TGAATATAACCTGTTTCGGCTGTTTTGACGGCGGTATCGATAAGACCTTCACGACCACCC 78654 Query 302659 ATAGCATGGAAGAATAGCTCT--TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGA 302716 || |||||||| || | ||| | |||| | || | ||| | | ||| ||||||| | Sbjct 78653 ATTGCATGGAAAAAAAATTCTTGTGGGGTC-AAACCTCTCAA-ATATGAGTTCTCAACAA 78596 Query 302717 AACC 302720 |||| Sbjct 78595 AACC 78592 Score = 86.0 bits (94), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 || |||||| | | |||||| |||||| || || || ||||| ||||||||||| Sbjct 79515 CAAAATTTCCTTTAAACGGGGGACACCAGAAGTAACTTTT---TTGGAAGCAACACCAGC 79459 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||| ||||| || || | ||| || | ||| |||||||| ||| || || | Sbjct 79458 AAAATGGAAGGTATTAAGGGTCATTTGTGTGGCTGGTTCACCAATGGATTGGGCTGCTAG 79399 Query 301932 CATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 79398 AACACCAACCATTTCACCAGG 79378 >seq2 Length=264690 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| | |||||||||| ||||||||||| || || || || | || || | Sbjct 234558 TGGGCAACAGTCATACGAGATGGAATAGCATGAGGGTTAATAATCAAATCTGGAACAATA 234499 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || || || || |||||||| || || | ||| || | |||||||| |||||||| Sbjct 234498 CCTTCTGCGGTAAATGGCATATC-TTCTCTACGATATGTGATACCAATAGTACCCTTTTG 234440 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| || || |||||||| Sbjct 234439 ACCGTGACGAGAAGCAAATTTGTCACCAAT 234410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471786013414475