Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178255.1_202017-04- 21] 1,675 sequences; 11,916,863 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq331 141 7e-29 seq546 96.9 3e-15 >seq331 Length=174153 Score = 141 bits (156), Expect = 7e-29 Identities = 386/586 (66%), Gaps = 34/586 (6%) Strand=Plus/Plus Query 19246 GGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT--GTCGCGTGTTT 19303 || || ||| |||||||||| || |||| || | ||||| |||| |||| | ||| Sbjct 79752 GGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGAGCGTTTGCAAGTCGAATCTTT 79811 Query 19304 TTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT-- 19360 || | ||| | || || || |||| | |||||| || |||||| | Sbjct 79812 CCTCCTTCAGTT---ATAGAAAAACTGGGTATTTCTCATGTTAAAGG---TTTGCTATTG 79865 Query 19361 -ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 | || || || ||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 79866 TACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 79925 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || |||||||| ||||| || | ||| || || ||| Sbjct 79926 GCTAAAGAGCC---CAAAATCGTCAATGGTCCAGAAATTTTGAGTAAGTACGTTGGTTCT 79982 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA-----AACGTT 19531 || |||||||| | || ||| ||| || || |||| |||| | | || | | Sbjct 79983 TCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGAATATAGGGCCAAGGGT 80042 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 ||| || ||| || || ||||| || | ||||| |||| | | | |||| Sbjct 80043 GAGG-----AATCTTCCTTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGC 80097 Query 19592 AAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 | |||||||| || || | ||| ||| |||| ||| || |||||| | | Sbjct 80098 AGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAG 80157 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 | ||| | || |||||| | ||| ||||||||||||| |||||||| ||||||||| | Sbjct 80158 CTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATTGGTATGACTAATCGTA 80217 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 || |||||||||| || | || || || ||| | || ||| | | | |||||| Sbjct 80218 AAGATTTAATAGACAATGCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTC 80277 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | |||||||||||| ||| | | ||||||| |||| || || Sbjct 80278 ATTTACCCGATGAAAAAGGAAGACTCCAAATTTTCGACATTCAGAC 80323 >seq546 Length=111834 Score = 96.9 bits (106), Expect = 3e-15 Identities = 358/561 (64%), Gaps = 45/561 (8%) Strand=Plus/Plus Query 40829 ATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGG 40888 |||||| || || || || |||||||| | | ||| ||||| || || |||||||| Sbjct 108717 ATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTTTATGG 108776 Query 40889 ATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGAT---TATACCAA 40945 |||||| | | | |||||||| || ||||| | || || | ||| ||||| Sbjct 108777 ATTTCAATGGAGGCATTTTGGTGCTAAATACAAGAC---GTGCGATGACGACTATACTGG 108833 Query 40946 TAAAGGAATGGATCAATT---ACAGTGCGTTATAGATACGATTAAATCCGATCCC---GA 40999 |||| || |||||||| |||| ||||| ||| | || | ||||| || Sbjct 108834 ACAAGGTATTGATCAATTGAAACAG---GTTATTCATAAACTAAAGACAAATCCCTACGA 108890 Query 41000 TAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCC 41059 ||| || || || || | || ||||||||| | || | | ||||| ||||| Sbjct 108891 TAGAAGA---ATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCTTTGCC 108947 Query 41060 ACCTTGTCATTTGTTATGTCAGTTTTACGTTTG------CAATG---GTGAA-------- 41102 ||| || ||| | || | ||||| || || | ||| | | ||| Sbjct 108948 ACCATGCCATATTTTTTCACAGTTCTATGTCAGTTTCCCCAAAGAAGGAGAAGGATCCGG 109007 Query 41103 ----------CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCC 41152 || ||||| |||||| ||| | || |||| ||||| | || || || Sbjct 109008 TAAGCCCCGCCTTTCATGCTTATTGTACCAACGTTCTTGTGATATGGGGTTGGGAGTACC 109067 Query 41153 GTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 |||||||| || |||||| || | || |||||||| | ||| | | | | Sbjct 109068 ATTTAACATTGCATCATATGCTTTGTTGACTAGAATGATTGCTAAAGTTGTCGACATGGA 109127 Query 41213 ACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 || ||||| || |||| || || || |||| |||| |||| | | ||||| || | Sbjct 109128 GCCAGGTGAGTTCATTCATACTTTGGGGGATGCACATGTTTATAAAGACCACATTGATGC 109187 Query 41273 GTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGC 41332 || | ||||||| | | |||| || |||||||| || | ||| |||||| | | Sbjct 109188 CTTGAAAGAACAAATCTCCAGAAATCCAAGACCATTCCCGAAACTAAAGATTAAAAGGGA 109247 Query 41333 TGTTGAAAACATTGATGATTT 41353 ||| || ||||||||||||| Sbjct 109248 CGTTAAAGACATTGATGATTT 109268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447886308375