Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178255.1_202017-04- 21] 1,675 sequences; 11,916,863 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1277 122 6e-23 >seq1277 Length=47777 Score = 122 bits (134), Expect = 6e-23 Identities = 168/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || || || || || || || || ||||| || | Sbjct 31876 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 31935 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 31936 GACACTATTGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATTCCTCCAGATCA 31994 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 ||| | || || |||||||| || ||||||||||| |||||| | | |||| Sbjct 31995 ACAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGATGGTAGAACGCTGTCT----GATT 32050 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||| || |||||||| || || ||||| || || || ||| |||| || Sbjct 32051 ATAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 32102 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || | || || ||||| |||||| | || ||||| ||| | Sbjct 31648 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 31707 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | |||| | ||||| |||||| | || |||||||| Sbjct 31708 GACACGATCGATAACGTTAAGTCGAAAA-TCCAGGACAAGGAAGGTATCCCTCCAGATCA 31766 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || |||||||| || || || ||||||| | || || || ||||| Sbjct 31767 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 31826 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | || || || || || ||| |||| || Sbjct 31827 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 31874 Score = 107 bits (118), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || || | |||||||| || | Sbjct 31420 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 31479 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 31480 GATACCATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGATCA 31538 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATT 23785 || | || || |||||||| || || || ||||||| ||||| | | |||| Sbjct 31539 GCAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCT----GATT 31594 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| || || |||||||| |||||| | || ||||| | |||| || Sbjct 31595 ACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 31646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002699850900