Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178265.1_202017-04- 22] 2,475 sequences; 12,565,824 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq578 141 7e-29 seq29 134 1e-26 seq1200 131 1e-25 seq154 118 8e-22 seq26 111 1e-19 >seq578 Length=310 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || ||||| | ||||| ||||| || ||||| ||||| Sbjct 251 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 192 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| || || || | ||||| | ||||| || ||| Sbjct 191 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 132 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||||| || | || ||||| ||| | ||| || Sbjct 131 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 72 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 71 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 24 >seq29 Length=85701 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || ||||| ||||| || ||||| |||||||| || | Sbjct 32968 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA--G 32911 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | ||||||| ||| || ||||| | ||||| | |||||| || | Sbjct 32910 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 32851 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||| || ||||| || | || ||||| ||| | ||| | Sbjct 32850 GGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 32791 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 32790 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 32741 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || | ||| | ||| || || || || ||||||||||| Sbjct 32512 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 32453 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||||| || || || || | ||||| | ||||| || || Sbjct 32452 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 32393 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||||| || | || ||||| ||| | ||| || Sbjct 32392 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 32333 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 32332 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 32285 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || ||||| ||||| || ||||| |||||||| || | Sbjct 32740 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA--G 32683 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||||| || || || || | ||||| | |||||| || | Sbjct 32682 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 32623 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||||| || || | || || || ||| ||| | Sbjct 32622 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 32563 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || ||||||||||| |||| ||| || ||||| || |||||| Sbjct 32562 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCATA 32513 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| || || || | ||||| || || || ||||| || ||||| || Sbjct 33196 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 33137 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||||| ||| || || || | ||||| | || ||||| ||| Sbjct 33136 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 33077 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || ||||| || | ||| || Sbjct 33076 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 33017 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || ||||||||||| || || ||||||||||||||| Sbjct 33016 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCATA 32969 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || | ||| | ||| || || || || ||||||||||| Sbjct 32284 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 32225 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||||| || || || || | ||||| | ||||| || || Sbjct 32224 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 32165 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || |||||| | ||| || Sbjct 32164 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 32105 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| |||| ||| || || ||||| |||||| Sbjct 32104 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATA 32057 >seq1200 Length=195268 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || || ||||| || ||||| |||||||| ||| Sbjct 186412 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 186471 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||| ||||| || ||||| | ||||| | |||||||| |||| Sbjct 186472 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 186531 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || ||||| || | ||| || Sbjct 186532 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 186591 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | |||||| || ||||| || | ||| || || ||||||||||| || Sbjct 186592 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 186641 >seq154 Length=294421 Score = 118 bits (130), Expect = 8e-22 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || ||||| || | || || |||||||| |||||||| || | Sbjct 253961 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA--G 254018 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| ||||| || ||||| | ||||| | |||||||| || Sbjct 254019 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 254078 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || || ||| | || ||||| || | ||| | Sbjct 254079 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 254138 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 | || || || ||||| ||||| |||| ||| || |||||| Sbjct 254139 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 254179 >seq26 Length=91611 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || || ||||| | || || || ||||| |||||||| || Sbjct 27554 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 27495 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| ||||| || ||||| | ||||| | |||||||| ||| Sbjct 27494 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 27435 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || || || | ||| || Sbjct 27434 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACT 27375 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 || || || ||||| ||||| |||| ||| || || || | | || | ||| ||||| | Sbjct 27374 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAGCTGTACAAAATTGGAATAAGT 27315 Query 15190 T 15190 | Sbjct 27314 T 27314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357381219605375