Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178265.1_202017-04- 22] 2,475 sequences; 12,565,824 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq578 163 4e-35 seq29 149 9e-31 seq1200 120 4e-22 seq26 111 2e-19 seq154 107 3e-18 >seq578 Length=310 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || || ||||| || |||| || ||| ||| Sbjct 25 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 84 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| |||| |||||| ||||| || ||||| || |||||||| ||| Sbjct 85 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 144 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| |||||||||||| || ||||| ||||| | || |||||||| Sbjct 145 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 204 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | ||| | ||||| ||||| ||||| ||||| ||| Sbjct 205 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGT 252 >seq29 Length=85701 Score = 149 bits (164), Expect = 9e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || || ||||| || |||| || ||| ||| Sbjct 32742 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 32801 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| |||| ||| || |||||||||||||| || ||||| || ||| Sbjct 32802 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 32861 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| |||||||| || |||||| ||||| || || || || | Sbjct 32862 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACA-- 32919 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || ||||| ||||| ||||| ||| Sbjct 32920 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 32969 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || || ||||| || |||| || ||| ||| Sbjct 32286 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 32345 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| |||| |||||| ||||| || ||||| || |||||||| ||| Sbjct 32346 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 32405 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||||||||||||| ||||| ||||| | || ||||| || Sbjct 32406 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 32465 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || | ||| | ||| |||| ||||||| ||| Sbjct 32466 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGT 32513 Score = 140 bits (154), Expect = 5e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 32970 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 33029 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 33030 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 33089 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| |||||||||||| || |||||| ||||| | || || || ||| Sbjct 33090 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 33149 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || ||||| | || || || || || || ||| Sbjct 33150 AT-TCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGT 33197 Score = 134 bits (148), Expect = 2e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 155810 TTTATGTAATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| ||||| | ||||| || || | || || ||||| || ||||| || ||||| Sbjct 32043 TTTAACTAATAGATTATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTG 32102 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 32103 GAAGTTGAATCTTCCGATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGT 32162 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || |||||||| |||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 32163 ATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACG 32222 Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047 | || ||||| || || || ||| | || | ||| | ||| |||| ||||||| Sbjct 32223 CTGTCTGATTACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGT 32282 Query 156048 GGT 156050 ||| Sbjct 32283 GGT 32285 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || ||||| || || ||||| || ||| || Sbjct 32514 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 32573 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || || ||||| || |||||||| ||| Sbjct 32574 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 32633 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||||||||| ||||| ||||| || || || || | Sbjct 32634 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACA-- 32691 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || ||||| ||||| ||||| ||| Sbjct 32692 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 32741 >seq1200 Length=195268 Score = 120 bits (132), Expect = 4e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 186641 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 186582 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || || || ||||| || ||||| || || || || Sbjct 186581 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 186522 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 186521 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 186462 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 186461 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 186410 >seq26 Length=91611 Score = 111 bits (122), Expect = 2e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || |||||||| || || || || || ||||| ||| |||||| | ||| | Sbjct 27341 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 27400 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || ||||| || || || || |||||||||||||| | Sbjct 27401 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 27460 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013 ||| |||||||| | ||||| |||||| |||| || || | | ||||||| || Sbjct 27461 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACA--ACATCCAAAAGGA 27518 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || | ||||| || || ||||||||||| ||| Sbjct 27519 ATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGT 27555 >seq154 Length=294421 Score = 107 bits (118), Expect = 3e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | || || |||||||| || || || || || ||||| ||| |||||| | |||| Sbjct 254178 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 254119 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || || ||||| || ||||| || || || || |||||||||||| Sbjct 254118 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 254059 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| |||||||| | ||||| ||||| || || || || || || ||| Sbjct 254058 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 253999 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | || | || ||||| || ||||| ||||| ||| Sbjct 253998 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGT 253960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731849357710000