Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178265.1_202017-04- 22] 2,475 sequences; 12,565,824 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq578 125 6e-24 seq1200 109 5e-19 seq29 107 2e-18 seq154 96.9 3e-15 >seq578 Length=310 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||| |||| || || || || ||| | || || || | Sbjct 25 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 84 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| || ||| ||||| ||||| | || |||||| Sbjct 85 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 144 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| ||||| || ||||| || | ||||| || | ||||| ||| Sbjct 145 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 204 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||||||||| ||||||| ||| || |||| || Sbjct 205 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 251 >seq1200 Length=195268 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||| ||||||||||| || || |||||| | ||| || || Sbjct 186641 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 186582 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | | || || ||||| ||||| ||||| | || || Sbjct 186581 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 186522 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | ||| ||||| || |||| |||| ||||| || | || ||| Sbjct 186521 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 186462 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| |||||||| | ||| |||| || ||| || |||| || Sbjct 186461 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 186412 >seq29 Length=85701 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| ||||| |||||||| || | ||| || || | Sbjct 32058 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 32117 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||| ||| ||||| ||||| | || |||||| Sbjct 32118 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 32177 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 32178 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 32237 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || || | ||| |||| || |||| || Sbjct 32238 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 32284 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||| |||| || || || || ||| | || || || | Sbjct 32286 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 32345 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| || ||| ||||| ||||| | || |||||| Sbjct 32346 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 32405 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 32406 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 32465 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || || | ||| |||| || |||| || Sbjct 32466 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 32512 >seq154 Length=294421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 110282 TTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTC 110341 |||||||| ||||| || || || ||||| || | ||| || || || ||| | Sbjct 254178 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 254119 Query 110342 GGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTT 110401 | | | || || |||||| ||||| ||||| | || || ||||||||| | Sbjct 254118 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 254059 Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 || | ||| ||||| || |||| || | ||||| || | || ||||||||||||||| Sbjct 254058 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 253999 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||| | || || ||| || |||| || Sbjct 253998 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 253961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829147020175