Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900178275.1_202017-04- 21] 583 sequences; 11,635,053 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq30 116 2e-21 seq39 100 2e-16 >seq30 Length=55709 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | |||||||||||| | || ||| || |||||||||||||| || Sbjct 32146 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 32087 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| ||||||||||| || || | ||||| || || || Sbjct 32086 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 32027 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| |||| ||| | ||| ||||| || || Sbjct 32026 ATACCTTCCTTGTCT-TGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 31968 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| || || || |||| ||||| || ||||| ||||| Sbjct 31967 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 31920 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | |||||||||||| | || ||| || |||||||||||||| || Sbjct 32374 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 32315 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| ||||||||||| || || | ||||| || || || Sbjct 32314 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 32255 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| |||| ||| | ||| ||||| || || Sbjct 32254 ATACCTTCCTTGTCT-TGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 32196 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| || || || |||| ||||| || ||||| ||||| Sbjct 32195 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 32148 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| | ||| | ||| |||||| |||||||| ||||| || Sbjct 31690 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 31631 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| || || ||||||||||| || || | ||||| || || || Sbjct 31630 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 31571 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | |||||| | || || || || || Sbjct 31570 ATACCTTCCTTGTCT-TGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAAC 31512 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||||||||| || || || || ||||||||||| Sbjct 31511 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 31464 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||||||||| || ||||| |||||||| ||||| || || || Sbjct 31918 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 31859 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| || || ||||||||||| || || | |||||| || || || Sbjct 31858 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 31799 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | |||||| || || ||||| | || || Sbjct 31798 ATACCTTCCTTGTCCTGGAT-TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAAC 31740 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||||||||| || || || ||||| |||||||| Sbjct 31739 CTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 31692 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||||||||| || || || || || |||| | ||||| ||||| Sbjct 32806 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGC 32747 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || || | || ||||| || || | || ||||||||| ||| ||| Sbjct 32746 TTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCT-TGAATTTT 32688 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | |||||| | ||| ||||| || || || | |||||| || ||||| || Sbjct 32687 CGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 32628 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || |||||||| ||||| Sbjct 32627 CAGTGTCTTGACAAAAATTTGCAT 32604 >seq39 Length=185279 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || ||||| |||||||| ||||| || || || Sbjct 176506 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 176565 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||| ||||| ||||| || || | |||||||| || || Sbjct 176566 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 176625 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | ||| ||||| || || Sbjct 176626 ATACCTTCCTTGTCTTGGATCTTG-GACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 176684 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| ||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 176685 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 176736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727363747839